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CITATION.cff
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# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
cff-version: 1.2.0
message: 'To cite package "reneeTools" in publications use:'
type: software
license: MIT
title: 'reneeTools: Helper functions for RENEE'
version: 0.0.0.9000
abstract: TODO What the package does (one paragraph).
authors:
- family-names: Koparde
given-names: Vishal
email: [email protected]
orcid: https://orcid.org/0000-0001-8978-8495
- family-names: Sovacool
given-names: Kelly
email: [email protected]
orcid: https://orcid.org/0000-0003-3283-829X
- family-names: Chill
given-names: Samantha
email: [email protected]
orcid: https://orcid.org/0000-0002-8734-9875
repository-code: https://github.com/CCBR/reneeTools
url: https://ccbr.github.io/reneeTools/
contact:
- family-names: Koparde
given-names: Vishal
email: [email protected]
orcid: https://orcid.org/0000-0001-8978-8495
references:
- type: software
title: 'R: A Language and Environment for Statistical Computing'
notes: Depends
url: https://www.R-project.org/
authors:
- name: R Core Team
institution:
name: R Foundation for Statistical Computing
address: Vienna, Austria
year: '2024'
version: '>= 2.10'
- type: software
title: amap
abstract: 'amap: Another Multidimensional Analysis Package'
notes: Imports
repository: https://CRAN.R-project.org/package=amap
authors:
- family-names: Lucas
given-names: Antoine
email: [email protected]
year: '2024'
doi: 10.32614/CRAN.package.amap
- type: software
title: colorspace
abstract: 'colorspace: A Toolbox for Manipulating and Assessing Colors and Palettes'
notes: Imports
url: https://colorspace.R-Forge.R-project.org/contact.html
repository: https://CRAN.R-project.org/package=colorspace
authors:
- family-names: Ihaka
given-names: Ross
email: [email protected]
- family-names: Murrell
given-names: Paul
email: [email protected]
orcid: https://orcid.org/0000-0002-3224-8858
- family-names: Hornik
given-names: Kurt
email: [email protected]
orcid: https://orcid.org/0000-0003-4198-9911
- family-names: Fisher
given-names: Jason C.
email: [email protected]
orcid: https://orcid.org/0000-0001-9032-8912
- family-names: Stauffer
given-names: Reto
email: [email protected]
orcid: https://orcid.org/0000-0002-3798-5507
- family-names: Wilke
given-names: Claus O.
email: [email protected]
orcid: https://orcid.org/0000-0002-7470-9261
- family-names: McWhite
given-names: Claire D.
email: [email protected]
orcid: https://orcid.org/0000-0001-7346-3047
- family-names: Zeileis
given-names: Achim
email: [email protected]
orcid: https://orcid.org/0000-0003-0918-3766
year: '2024'
doi: 10.32614/CRAN.package.colorspace
- type: software
title: ComplexHeatmap
abstract: 'ComplexHeatmap: Make Complex Heatmaps'
notes: Imports
url: https://jokergoo.github.io/ComplexHeatmap-reference/book/
repository: https://bioconductor.org/
authors:
- family-names: Gu
given-names: Zuguang
email: [email protected]
orcid: https://orcid.org/0000-0002-7395-8709
year: '2024'
doi: 10.18129/B9.bioc.ComplexHeatmap
- type: software
title: dendsort
abstract: 'dendsort: Modular Leaf Ordering Methods for Dendrogram Nodes'
notes: Imports
url: https://github.com/evanbiederstedt/dendsort
repository: https://CRAN.R-project.org/package=dendsort
authors:
- family-names: Sakai
given-names: Ryo
email: [email protected]
- family-names: Biederstedt
given-names: Evan
email: [email protected]
year: '2024'
doi: 10.32614/CRAN.package.dendsort
- type: software
title: DESeq2
abstract: 'DESeq2: Differential gene expression analysis based on the negative binomial
distribution'
notes: Imports
url: https://github.com/thelovelab/DESeq2
repository: https://bioconductor.org/
authors:
- family-names: Love
given-names: Michael
email: [email protected]
- family-names: Anders
given-names: Simon
- family-names: Huber
given-names: Wolfgang
year: '2024'
doi: 10.18129/B9.bioc.DESeq2
- type: software
title: dplyr
abstract: 'dplyr: A Grammar of Data Manipulation'
notes: Imports
url: https://dplyr.tidyverse.org
repository: https://CRAN.R-project.org/package=dplyr
authors:
- family-names: Wickham
given-names: Hadley
email: [email protected]
orcid: https://orcid.org/0000-0003-4757-117X
- family-names: François
given-names: Romain
orcid: https://orcid.org/0000-0002-2444-4226
- family-names: Henry
given-names: Lionel
- family-names: Müller
given-names: Kirill
orcid: https://orcid.org/0000-0002-1416-3412
- family-names: Vaughan
given-names: Davis
email: [email protected]
orcid: https://orcid.org/0000-0003-4777-038X
year: '2024'
doi: 10.32614/CRAN.package.dplyr
- type: software
title: edgeR
abstract: 'edgeR: Empirical Analysis of Digital Gene Expression Data in R'
notes: Imports
url: https://bioinf.wehi.edu.au/edgeR/
repository: https://bioconductor.org/
authors:
- family-names: Chen
given-names: Yunshun
- family-names: Lun
given-names: Aaron TL
- family-names: McCarthy
given-names: Davis J
- family-names: Chen
given-names: Lizhong
- family-names: Baldoni
given-names: Pedro
- family-names: Ritchie
given-names: Matthew E
- family-names: Phipson
given-names: Belinda
- family-names: Hu
given-names: Yifang
- family-names: Zhou
given-names: Xiaobei
- family-names: Robinson
given-names: Mark D
- family-names: Smyth
given-names: Gordon K
year: '2024'
doi: 10.18129/B9.bioc.edgeR
- type: software
title: ggplot2
abstract: 'ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics'
notes: Imports
url: https://ggplot2.tidyverse.org
repository: https://CRAN.R-project.org/package=ggplot2
authors:
- family-names: Wickham
given-names: Hadley
email: [email protected]
orcid: https://orcid.org/0000-0003-4757-117X
- family-names: Chang
given-names: Winston
orcid: https://orcid.org/0000-0002-1576-2126
- family-names: Henry
given-names: Lionel
- family-names: Pedersen
given-names: Thomas Lin
email: [email protected]
orcid: https://orcid.org/0000-0002-5147-4711
- family-names: Takahashi
given-names: Kohske
- family-names: Wilke
given-names: Claus
orcid: https://orcid.org/0000-0002-7470-9261
- family-names: Woo
given-names: Kara
orcid: https://orcid.org/0000-0002-5125-4188
- family-names: Yutani
given-names: Hiroaki
orcid: https://orcid.org/0000-0002-3385-7233
- family-names: Dunnington
given-names: Dewey
orcid: https://orcid.org/0000-0002-9415-4582
- family-names: Brand
given-names: Teun
name-particle: van den
orcid: https://orcid.org/0000-0002-9335-7468
year: '2024'
doi: 10.32614/CRAN.package.ggplot2
- type: software
title: ggrepel
abstract: 'ggrepel: Automatically Position Non-Overlapping Text Labels with ''ggplot2'''
notes: Imports
url: https://ggrepel.slowkow.com/
repository: https://CRAN.R-project.org/package=ggrepel
authors:
- family-names: Slowikowski
given-names: Kamil
email: [email protected]
orcid: https://orcid.org/0000-0002-2843-6370
year: '2024'
doi: 10.32614/CRAN.package.ggrepel
- type: software
title: methods
abstract: 'R: A Language and Environment for Statistical Computing'
notes: Imports
authors:
- name: R Core Team
institution:
name: R Foundation for Statistical Computing
address: Vienna, Austria
year: '2024'
- type: software
title: plotly
abstract: 'plotly: Create Interactive Web Graphics via ''plotly.js'''
notes: Imports
url: https://plotly-r.com
repository: https://CRAN.R-project.org/package=plotly
authors:
- family-names: Sievert
given-names: Carson
email: [email protected]
orcid: https://orcid.org/0000-0002-4958-2844
- family-names: Parmer
given-names: Chris
email: [email protected]
- family-names: Hocking
given-names: Toby
email: [email protected]
- family-names: Chamberlain
given-names: Scott
email: [email protected]
- family-names: Ram
given-names: Karthik
email: [email protected]
- family-names: Corvellec
given-names: Marianne
email: [email protected]
orcid: https://orcid.org/0000-0002-1994-3581
- family-names: Despouy
given-names: Pedro
email: [email protected]
year: '2024'
doi: 10.32614/CRAN.package.plotly
- type: software
title: reshape2
abstract: 'reshape2: Flexibly Reshape Data: A Reboot of the Reshape Package'
notes: Imports
url: https://github.com/hadley/reshape
repository: https://CRAN.R-project.org/package=reshape2
authors:
- family-names: Wickham
given-names: Hadley
email: [email protected]
year: '2024'
doi: 10.32614/CRAN.package.reshape2
- type: software
title: rlang
abstract: 'rlang: Functions for Base Types and Core R and ''Tidyverse'' Features'
notes: Imports
url: https://rlang.r-lib.org
repository: https://CRAN.R-project.org/package=rlang
authors:
- family-names: Henry
given-names: Lionel
email: [email protected]
- family-names: Wickham
given-names: Hadley
email: [email protected]
year: '2024'
doi: 10.32614/CRAN.package.rlang
- type: software
title: S7
abstract: 'S7: An Object Oriented System Meant to Become a Successor to S3 and S4'
notes: Imports
url: https://github.com/rconsortium/S7/
repository: https://CRAN.R-project.org/package=S7
authors:
- family-names: Vaughan
given-names: Davis
- family-names: Hester
given-names: Jim
orcid: https://orcid.org/0000-0002-2739-7082
- family-names: Kalinowski
given-names: Tomasz
- family-names: Landau
given-names: Will
- family-names: Lawrence
given-names: Michael
- family-names: Maechler
given-names: Martin
orcid: https://orcid.org/0000-0002-8685-9910
- family-names: Tierney
given-names: Luke
- family-names: Wickham
given-names: Hadley
email: [email protected]
orcid: https://orcid.org/0000-0003-4757-117X
year: '2024'
doi: 10.32614/CRAN.package.S7
- type: software
title: stats
abstract: 'R: A Language and Environment for Statistical Computing'
notes: Imports
authors:
- name: R Core Team
institution:
name: R Foundation for Statistical Computing
address: Vienna, Austria
year: '2024'
- type: software
title: tibble
abstract: 'tibble: Simple Data Frames'
notes: Imports
url: https://tibble.tidyverse.org/
repository: https://CRAN.R-project.org/package=tibble
authors:
- family-names: Müller
given-names: Kirill
email: [email protected]
orcid: https://orcid.org/0000-0002-1416-3412
- family-names: Wickham
given-names: Hadley
email: [email protected]
year: '2024'
doi: 10.32614/CRAN.package.tibble
- type: software
title: tidyr
abstract: 'tidyr: Tidy Messy Data'
notes: Imports
url: https://tidyr.tidyverse.org
repository: https://CRAN.R-project.org/package=tidyr
authors:
- family-names: Wickham
given-names: Hadley
email: [email protected]
- family-names: Vaughan
given-names: Davis
email: [email protected]
- family-names: Girlich
given-names: Maximilian
year: '2024'
doi: 10.32614/CRAN.package.tidyr
- type: software
title: tidyselect
abstract: 'tidyselect: Select from a Set of Strings'
notes: Imports
url: https://tidyselect.r-lib.org
repository: https://CRAN.R-project.org/package=tidyselect
authors:
- family-names: Henry
given-names: Lionel
email: [email protected]
- family-names: Wickham
given-names: Hadley
email: [email protected]
year: '2024'
doi: 10.32614/CRAN.package.tidyselect
- type: software
title: glue
abstract: 'glue: Interpreted String Literals'
notes: Suggests
url: https://glue.tidyverse.org/
repository: https://CRAN.R-project.org/package=glue
authors:
- family-names: Hester
given-names: Jim
orcid: https://orcid.org/0000-0002-2739-7082
- family-names: Bryan
given-names: Jennifer
email: [email protected]
orcid: https://orcid.org/0000-0002-6983-2759
year: '2024'
doi: 10.32614/CRAN.package.glue
- type: software
title: knitr
abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
notes: Suggests
url: https://yihui.org/knitr/
repository: https://CRAN.R-project.org/package=knitr
authors:
- family-names: Xie
given-names: Yihui
email: [email protected]
orcid: https://orcid.org/0000-0003-0645-5666
year: '2024'
doi: 10.32614/CRAN.package.knitr
- type: software
title: lobstr
abstract: 'lobstr: Visualize R Data Structures with Trees'
notes: Suggests
url: https://lobstr.r-lib.org/
repository: https://CRAN.R-project.org/package=lobstr
authors:
- family-names: Wickham
given-names: Hadley
email: [email protected]
year: '2024'
doi: 10.32614/CRAN.package.lobstr
- type: software
title: RColorBrewer
abstract: 'RColorBrewer: ColorBrewer Palettes'
notes: Suggests
repository: https://CRAN.R-project.org/package=RColorBrewer
authors:
- family-names: Neuwirth
given-names: Erich
email: [email protected]
year: '2024'
doi: 10.32614/CRAN.package.RColorBrewer
- type: software
title: readr
abstract: 'readr: Read Rectangular Text Data'
notes: Suggests
url: https://readr.tidyverse.org
repository: https://CRAN.R-project.org/package=readr
authors:
- family-names: Wickham
given-names: Hadley
email: [email protected]
- family-names: Hester
given-names: Jim
- family-names: Bryan
given-names: Jennifer
email: [email protected]
orcid: https://orcid.org/0000-0002-6983-2759
year: '2024'
doi: 10.32614/CRAN.package.readr
- type: software
title: rmarkdown
abstract: 'rmarkdown: Dynamic Documents for R'
notes: Suggests
url: https://pkgs.rstudio.com/rmarkdown/
repository: https://CRAN.R-project.org/package=rmarkdown
authors:
- family-names: Allaire
given-names: JJ
email: [email protected]
- family-names: Xie
given-names: Yihui
email: [email protected]
orcid: https://orcid.org/0000-0003-0645-5666
- family-names: Dervieux
given-names: Christophe
email: [email protected]
orcid: https://orcid.org/0000-0003-4474-2498
- family-names: McPherson
given-names: Jonathan
email: [email protected]
- family-names: Luraschi
given-names: Javier
- family-names: Ushey
given-names: Kevin
email: [email protected]
- family-names: Atkins
given-names: Aron
email: [email protected]
- family-names: Wickham
given-names: Hadley
email: [email protected]
- family-names: Cheng
given-names: Joe
email: [email protected]
- family-names: Chang
given-names: Winston
email: [email protected]
- family-names: Iannone
given-names: Richard
email: [email protected]
orcid: https://orcid.org/0000-0003-3925-190X
year: '2024'
doi: 10.32614/CRAN.package.rmarkdown
- type: software
title: scales
abstract: 'scales: Scale Functions for Visualization'
notes: Suggests
url: https://scales.r-lib.org
repository: https://CRAN.R-project.org/package=scales
authors:
- family-names: Wickham
given-names: Hadley
email: [email protected]
- family-names: Pedersen
given-names: Thomas Lin
email: [email protected]
orcid: https://orcid.org/0000-0002-5147-4711
- family-names: Seidel
given-names: Dana
year: '2024'
doi: 10.32614/CRAN.package.scales
- type: software
title: styler
abstract: 'styler: Non-Invasive Pretty Printing of R Code'
notes: Suggests
url: https://styler.r-lib.org
repository: https://CRAN.R-project.org/package=styler
authors:
- family-names: Müller
given-names: Kirill
email: [email protected]
orcid: https://orcid.org/0000-0002-1416-3412
- family-names: Walthert
given-names: Lorenz
email: [email protected]
year: '2024'
doi: 10.32614/CRAN.package.styler
- type: software
title: testthat
abstract: 'testthat: Unit Testing for R'
notes: Suggests
url: https://testthat.r-lib.org
repository: https://CRAN.R-project.org/package=testthat
authors:
- family-names: Wickham
given-names: Hadley
email: [email protected]
year: '2024'
doi: 10.32614/CRAN.package.testthat
version: '>= 3.0.0'
- type: software
title: usethis
abstract: 'usethis: Automate Package and Project Setup'
notes: Suggests
url: https://usethis.r-lib.org
repository: https://CRAN.R-project.org/package=usethis
authors:
- family-names: Wickham
given-names: Hadley
email: [email protected]
orcid: https://orcid.org/0000-0003-4757-117X
- family-names: Bryan
given-names: Jennifer
email: [email protected]
orcid: https://orcid.org/0000-0002-6983-2759
- family-names: Barrett
given-names: Malcolm
email: [email protected]
orcid: https://orcid.org/0000-0003-0299-5825
- family-names: Teucher
given-names: Andy
email: [email protected]
orcid: https://orcid.org/0000-0002-7840-692X
year: '2024'
doi: 10.32614/CRAN.package.usethis