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Redundant files and organization #23

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iamciera opened this issue May 10, 2018 · 0 comments
Open

Redundant files and organization #23

iamciera opened this issue May 10, 2018 · 0 comments

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@iamciera
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iamciera commented May 10, 2018 •
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The code folder is a little crazy. attn: @alexnakagawa, @jshi1010

Few issues:

  1. What is the difference between these two files?
    motif_mapping.ipynb & Motif_Scoring_and_Extraction.ipynb. Is the motif_mapping file just for D3 building?

  2. Motif_Scoring_and_Extraction.ipynb filename should be lowercase: motif_scoring_and_extraction.ipynb

  3. We should split the command line code (map_motif.py) from the Jupyter notebook code and maybe even the an additional folder for D3 code. The structure could be py, ipynb, and D3. Thoughts?
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