diff --git a/_data/sidebars/main.yml b/_data/sidebars/main.yml index e1a4655..1d3a06f 100644 --- a/_data/sidebars/main.yml +++ b/_data/sidebars/main.yml @@ -32,7 +32,7 @@ subitems: url: /fairdom-in-use/Datahub - title: Digital Research Hub url: /fairdom-in-use/scilifelab - - title: Projects + - title: FAIRDOM Projects url: /fairdom-in-use/fairdom_projects_search subitems: - title: BioIndustry4.0 @@ -86,16 +86,16 @@ subitems: # url: /pals # - title: Systems Biology Foundry # url: /sbf - - title: Engage - url: /engage + #- title: Engage + # url: /engage #- title: Collaborations # subitems: - title: Support subitems: - title: Data Management url: /data_management - #- title: FAIRDOM Cost - # url: /FAIRDOM_Cost + - title: FAIRDOM Cost + url: /FAIRDOM_Cost - title: Community Standards url: /community_standards - title: Outreach @@ -116,6 +116,6 @@ subitems: url: /contact - title: How to Get Involved url: /get_involved - subitems: - - title: FAIRDOM Cost - url: /FAIRDOM_Cost + #subitems: + # - title: FAIRDOM Cost + # url: /FAIRDOM_Cost diff --git a/images/FAIRDOMHub-landing.png b/images/FAIRDOMHub-landing.png new file mode 100644 index 0000000..eef09c6 Binary files /dev/null and b/images/FAIRDOMHub-landing.png differ diff --git a/pages/fairdom_in_use/fairdom_hubs/Datahub.md b/pages/fairdom_in_use/fairdom_hubs/Datahub.md index 16646c8..a7eae08 100644 --- a/pages/fairdom_in_use/fairdom_hubs/Datahub.md +++ b/pages/fairdom_in_use/fairdom_hubs/Datahub.md @@ -1,7 +1,7 @@ --- title: DataHub type: hub -description: DataHub is a public FAIRDOM-SEEK instance developed by ELIXIR Belgium +description: DataHub is a public FAIRDOM-SEEK instance developed by ELIXIR Belgium. redirect_from: - /datahub --- diff --git a/pages/fairdom_in_use/fairdom_hubs/ibisbakhub.md b/pages/fairdom_in_use/fairdom_hubs/ibisbakhub.md index 4721f78..657aa62 100644 --- a/pages/fairdom_in_use/fairdom_hubs/ibisbakhub.md +++ b/pages/fairdom_in_use/fairdom_hubs/ibisbakhub.md @@ -2,7 +2,7 @@ title: IBISBAKHub toc: false type: hub -description: The IBISBAKHub is a Knowledge Hub for scientific information related to IBISBA, the European infrastructure producing translational R&D&I services to an international community of Industrial Biotechnology. +description: The IBISBAKHub is a Knowledge Hub for scientific information related to an international community of Industrial Biotechnology. redirect_from: - /ibisbahub - /fairdom-in-use/ibisbahub diff --git a/pages/fairdom_in_use/fairdom_hubs/workflowhub.md b/pages/fairdom_in_use/fairdom_hubs/workflowhub.md index 0c1448f..0233e08 100644 --- a/pages/fairdom_in_use/fairdom_hubs/workflowhub.md +++ b/pages/fairdom_in_use/fairdom_hubs/workflowhub.md @@ -2,7 +2,7 @@ title: WorkflowHub toc: false type: hub -description: The WorkflowHub is a public registry for sharing and publishing computational workflows from any discipline using any workflow language, including Notebooks. +description: The WorkflowHub is a public registry for sharing and publishing computational workflows from any discipline using any workflow language. # a page with this name appears in two locations! redirect_from: - /workflowhub diff --git a/pages/fairdom_in_use/fairdom_hubs_search.md b/pages/fairdom_in_use/fairdom_hubs_search.md index af658c7..8f3e535 100644 --- a/pages/fairdom_in_use/fairdom_hubs_search.md +++ b/pages/fairdom_in_use/fairdom_hubs_search.md @@ -3,7 +3,7 @@ title: FAIRDOM Hubs type: fairdom_in_use_search --- -Browse the places that FAIRDOM is used as a hub. +Take a look at the Hubs described below and see the different ways Hubs are configured to suit different needs. {% include section-navigation-tiles.html type="hub" %} diff --git a/pages/fairdom_in_use/fairdom_projects/Lisym.md b/pages/fairdom_in_use/fairdom_projects/Lisym.md index e041ad4..1c8314e 100644 --- a/pages/fairdom_in_use/fairdom_projects/Lisym.md +++ b/pages/fairdom_in_use/fairdom_projects/Lisym.md @@ -13,7 +13,6 @@ The project members use the [LiSyM SEEK](https://seek.lisym.org) to upload and o --> -## Description of the Hub The [LiSyM SEEK](https://seek.lisym.org/) is one of the key Project Hubs building on the FAIRDOM-SEEK platform, serving the Liver Systems Medicine [LiSyM](https://www.lisym.org/) network and its follow up project LiSyM-Cancer. Research results of both projects are collected and published on the LiSyM-SEEK platform. diff --git a/pages/fairdom_in_use/fairdom_projects/nfdi4health.md b/pages/fairdom_in_use/fairdom_projects/nfdi4health.md index 4b1bbfd..82caf24 100644 --- a/pages/fairdom_in_use/fairdom_projects/nfdi4health.md +++ b/pages/fairdom_in_use/fairdom_projects/nfdi4health.md @@ -28,7 +28,7 @@ The SEEK-based Local Data Hub now fully represents the comprehensive NFDI4Health Extended Metadata supports the definition of additional metadata attributes for a particular type, enabling adherence to specific standards (e.g., NFDI4Health MDS). While not directly visible to users, these attributes are associated with a particular attribute type, marked as optional or mandatory, and validated against. Extended Metadata works similarly to Samples, sharing code and defining attributes with names linked to a SampleAttributeType. -{% include image.html file="fairdom_in_use/nfdi4health2.png" alt="screenshot of the architecture of Extended Metadata" class="screenshot" caption="screenshot of the architecture of Extended Metadata" %} +{% include image.html file="fairdom_in_use/nfdi4health2.png" alt="screenshot of the architecture of Extended Metadata" class="screenshot" caption="Screenshot of the architecture of Extended Metadata" %} Extended Metadata types are linked to specific resource types in SEEK, including Collection, DataFile, Document, Event, Model, Presentation, SOP, and Project. @@ -50,9 +50,9 @@ Moreover, users can define Nested Extended Metadata, introducing a hierarchical It is worth mentioning that users can easily access extended metadata through the user interface or the API. The API extends possibilities, enabling interaction with remote platforms like the German Health Study Hub. -{% include image.html file="fairdom_in_use/nfdi4health3.png" alt="screenshot of MDS implementation using extended metadata function" class="screenshot" caption="screenshot of MDS implementation using extended metadata function" %} +{% include image.html file="fairdom_in_use/nfdi4health3.png" alt="screenshot of MDS implementation using extended metadata function" class="screenshot" caption="Screenshot of MDS implementation using extended metadata function" %} -{% include image.html file="fairdom_in_use/nfdi4health4.png" alt="screenshot of accessing MDS in SEEK through the user interface or the JSON API" class="screenshot" caption="screenshot of accessing MDS in SEEK through the user interface or the JSON API" %} +{% include image.html file="fairdom_in_use/nfdi4health4.png" alt="screenshot of accessing MDS in SEEK through the user interface or the JSON API" class="screenshot" caption="Screenshot of accessing MDS in SEEK through the user interface or the JSON API" %} diff --git a/pages/fairdom_in_use/fairdom_projects/scilifelab.md b/pages/fairdom_in_use/fairdom_projects/scilifelab.md index c69fc47..d534f51 100644 --- a/pages/fairdom_in_use/fairdom_projects/scilifelab.md +++ b/pages/fairdom_in_use/fairdom_projects/scilifelab.md @@ -1,6 +1,6 @@ --- title: Digital Research Hub -description: SciLifeLab is a Swedish national resource of unique technologies and expertise available to life scientists, closely intertwined with the research community in areas such as biomedicine, ecology, and evolution. +description: SciLifeLab is a Swedish national resource of unique technologies and expertise available to life scientists. toc: false #type: fairdom_in_use type: hub diff --git a/pages/fairdom_in_use/fairdom_projects_search.md b/pages/fairdom_in_use/fairdom_projects_search.md index 62df90d..21ade00 100644 --- a/pages/fairdom_in_use/fairdom_projects_search.md +++ b/pages/fairdom_in_use/fairdom_projects_search.md @@ -3,7 +3,7 @@ title: FAIRDOM Projects type: fairdom_in_use_search --- -Browse the places that FAIRDOM is used in a project. +Take a look at the projects described below and see the different ways SEEK has been used. {% include section-navigation-tiles.html type="project" %} diff --git a/pages/fairdom_in_use/fairdomhub.md b/pages/fairdom_in_use/fairdomhub.md index d489660..ca5b46e 100644 --- a/pages/fairdom_in_use/fairdomhub.md +++ b/pages/fairdom_in_use/fairdomhub.md @@ -13,7 +13,7 @@ By using the FAIRDOMHub, researchers can achieve more effective exchange with ge ensure results are sustained and preserved and generate reproducible publications that adhere to the FAIR guiding principles of data stewardship. -{% include image.html file="FAIRDOMHub.png" alt="FAIRDOM Hub" click=true class='screenshot' %} +{% include image.html file="FAIRDOMHub-landing.png" alt="FAIRDOM Hub" click=true class='screenshot' caption='Screenshot of the FAIRDOMHub homepage' %} diff --git a/pages/fairdom_in_use/fdom_in_use.md b/pages/fairdom_in_use/fdom_in_use.md index 8a5da83..d995bd5 100644 --- a/pages/fairdom_in_use/fdom_in_use.md +++ b/pages/fairdom_in_use/fdom_in_use.md @@ -3,6 +3,7 @@ title: FAIRDOM In Use toc: false redirect_from: - /instance + - /fairdom_in_use --- **FAIRDOM-SEEK** can be installed, run and further developed as an own instance, enabling the building of Project Hubs where investigators can store, share, access, connect and interact with digital objects generated from their research, and use them in their own analyses. diff --git a/pages/fairdom_platform/fairdomseek.md b/pages/fairdom_platform/fairdomseek.md index 3f5ef08..41e45c6 100644 --- a/pages/fairdom_platform/fairdomseek.md +++ b/pages/fairdom_platform/fairdomseek.md @@ -10,14 +10,14 @@ It is a mature web-based resource for organising, sharing and publishing heterogeneous scientific research datasets, models or simulations, protocols, workflows, samples, publications and other research outcomes. It preserves associations between them, along with information about the people and organisations. -{% include image.html file="fairdom-seek.png" alt="FAIRDOM-SEEK" click=true class='screenshot' %} +{% include image.html file="fairdom-seek.png" alt="FAIRDOM-SEEK" click=true class='screenshot' caption='FAIRDOMHub is an example of the FAIRDOM-SEEK platform' %} The platform enables the building of Project Hubs where investigators can store, share, access, connect and interact with digital objects generated from their research, and use them in their own analyses. FAIRDOM provides a public Hub that anyone can register with and use. For more details please visit [FAIRDOMHub](/fairdomhub). -For more information about FAIRDOM-SEEK, including more details about available features, please visit . +For more information about FAIRDOM-SEEK, including more details about available features, please visit . More details can also found by browsing the [Documentation](https://docs.seek4science.org). To see what changes and new features are coming, see the [FAIRDOM-SEEK Roadmap](https://docs.seek4science.org/tech/roadmap.html).