From ff1a65dab775a9956add60b2bd1f19fc65b2434b Mon Sep 17 00:00:00 2001 From: Andrew Davison Date: Thu, 8 Jul 2021 12:13:06 +0200 Subject: [PATCH 1/7] Release notes for v0.10.0 also updated the supported Neo/NumPy versions following our decision to follow one year behind NEP-29 --- .travis.yml | 30 +++++++++++++++++++----------- LICENSE.txt | 2 +- README.rst | 2 +- doc/source/authors.rst | 7 +++++-- doc/source/conf.py | 2 +- doc/source/install.rst | 4 ++-- doc/source/whatisnew.rst | 1 + neo/version.py | 2 +- requirements.txt | 2 +- setup.py | 8 ++++---- 10 files changed, 36 insertions(+), 24 deletions(-) diff --git a/.travis.yml b/.travis.yml index 4ab0e1182..7ff6dec06 100644 --- a/.travis.yml +++ b/.travis.yml @@ -4,18 +4,10 @@ sudo: false matrix: include: - - python: "3.6" - env: NUMPY_VERSION="1.14.6" - - python: "3.6" - env: NUMPY_VERSION="1.18.3" - python: "3.7" - env: NUMPY_VERSION="1.14.6" + env: NUMPY_VERSION="1.16.6" - python: "3.7" - env: NUMPY_VERSION="1.19.2" - - python: "3.8" - env: NUMPY_VERSION="1.14.6" - - python: "3.8" - env: NUMPY_VERSION="1.15.4" + env: NUMPY_VERSION="1.21.0" - python: "3.8" env: NUMPY_VERSION="1.16.6" - python: "3.8" @@ -23,7 +15,23 @@ matrix: - python: "3.8" env: NUMPY_VERSION="1.18.5" - python: "3.8" - env: NUMPY_VERSION="1.19.2" + env: NUMPY_VERSION="1.19.5" + - python: "3.8" + env: NUMPY_VERSION="1.20.3" + - python: "3.8" + env: NUMPY_VERSION="1.21.0" + - python: "3.9" + env: NUMPY_VERSION="1.16.6" + - python: "3.9" + env: NUMPY_VERSION="1.17.5" + - python: "3.9" + env: NUMPY_VERSION="1.18.5" + - python: "3.9" + env: NUMPY_VERSION="1.19.5" + - python: "3.9" + env: NUMPY_VERSION="1.20.3" + - python: "3.9" + env: NUMPY_VERSION="1.21.0" # command to install dependencies before_install: diff --git a/LICENSE.txt b/LICENSE.txt index cbd46d224..0fcae7d28 100644 --- a/LICENSE.txt +++ b/LICENSE.txt @@ -1,4 +1,4 @@ -Copyright (c) 2010-2020, Neo authors and contributors +Copyright (c) 2010-2021, Neo authors and contributors All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: diff --git a/README.rst b/README.rst index 1a002cb72..482a4df59 100644 --- a/README.rst +++ b/README.rst @@ -53,7 +53,7 @@ For installation instructions, see doc/source/install.rst To cite Neo in publications, see CITATION.txt -:copyright: Copyright 2010-2020 by the Neo team, see doc/source/authors.rst. +:copyright: Copyright 2010-2021 by the Neo team, see doc/source/authors.rst. :license: 3-Clause Revised BSD License, see LICENSE.txt for details. Funding diff --git a/doc/source/authors.rst b/doc/source/authors.rst index 0878a8641..159bea37d 100644 --- a/doc/source/authors.rst +++ b/doc/source/authors.rst @@ -24,10 +24,10 @@ and may not be the current affiliation of a contributor. * Erik Li [9] * Georg Raiser [10] * Joffrey Gonin [2] -* Kyler Brown [?] +* Kyler Brown * Mikkel Elle Lepperød [11] * C Daniel Meliza [12] -* Julia Sprenger [13] +* Julia Sprenger [13, 6] * Maximilian Schmidt [13] * Johanna Senk [13] * Carlos Canova [13] @@ -57,6 +57,9 @@ and may not be the current affiliation of a contributor. * Alessio Buccino [23] * Regimantas Jurkus [13] * Steffen Buergers [24] +* Etienne Combrisson [6] +* Ben Dichter [24] +* Elodie Legouée [21] 1. Centre de Recherche en Neuroscience de Lyon, CNRS UMR5292 - INSERM U1028 - Universite Claude Bernard Lyon 1 2. Unité de Neuroscience, Information et Complexité, CNRS UPR 3293, Gif-sur-Yvette, France diff --git a/doc/source/conf.py b/doc/source/conf.py index 7415b32b5..b05adde32 100644 --- a/doc/source/conf.py +++ b/doc/source/conf.py @@ -51,7 +51,7 @@ # General information about the project. project = 'Neo' -copyright = '2010-2020, ' + AUTHORS +copyright = '2010-2021, ' + AUTHORS # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the diff --git a/doc/source/install.rst b/doc/source/install.rst index d190b2f51..8275c1d95 100644 --- a/doc/source/install.rst +++ b/doc/source/install.rst @@ -11,8 +11,8 @@ Installing from the Python Package Index Dependencies ------------ - * Python_ >= 3.6 - * numpy_ >= 1.13.0 + * Python_ >= 3.7 + * numpy_ >= 1.16.1 * quantities_ >= 0.12.1 You can install the latest published version of Neo and its dependencies using:: diff --git a/doc/source/whatisnew.rst b/doc/source/whatisnew.rst index 67923d78c..3c74f629a 100644 --- a/doc/source/whatisnew.rst +++ b/doc/source/whatisnew.rst @@ -6,6 +6,7 @@ Release notes .. toctree:: :maxdepth: 1 + releases/0.10.0.rst releases/0.9.0.rst releases/0.8.0.rst releases/0.7.2.rst diff --git a/neo/version.py b/neo/version.py index 52cb5b4e4..de094d790 100644 --- a/neo/version.py +++ b/neo/version.py @@ -1 +1 @@ -version = '0.9.0' +version = '0.10.0' diff --git a/requirements.txt b/requirements.txt index 421a5361f..bb1ed216b 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,2 +1,2 @@ -numpy>=1.13.0,!=1.16.0 +numpy>=1.16.1 quantities>=0.12.1 diff --git a/setup.py b/setup.py index 50e772402..7bb3cd105 100755 --- a/setup.py +++ b/setup.py @@ -4,13 +4,13 @@ import os long_description = open("README.rst").read() -install_requires = ['numpy>=1.13.0,!=1.16.0', +install_requires = ['numpy>=1.16.1', 'quantities>=0.12.1'] extras_require = { 'igorproio': ['igor'], 'kwikio': ['scipy', 'klusta'], 'neomatlabio': ['scipy>=1.0.0'], - 'nixio': ['nixio>=1.5.0b2'], + 'nixio': ['nixio>=1.5.0'], 'stimfitio': ['stfio'], 'tiffio': ['pillow'] } @@ -34,7 +34,7 @@ long_description=long_description, license="BSD-3-Clause", url='https://neuralensemble.org/neo', - python_requires=">=3.6", + python_requires=">=3.7", classifiers=[ 'Development Status :: 4 - Beta', 'Intended Audience :: Science/Research', @@ -42,9 +42,9 @@ 'Natural Language :: English', 'Operating System :: OS Independent', 'Programming Language :: Python :: 3', - 'Programming Language :: Python :: 3.6', 'Programming Language :: Python :: 3.7', 'Programming Language :: Python :: 3.8', + 'Programming Language :: Python :: 3.9', 'Programming Language :: Python :: 3 :: Only', 'Topic :: Scientific/Engineering'] ) From 9b50dbd1b4587c0ae38b50163c91eaef15028ccb Mon Sep 17 00:00:00 2001 From: Andrew Davison Date: Fri, 9 Jul 2021 10:47:22 +0200 Subject: [PATCH 2/7] Forgot to add this file [skip ci] --- doc/source/releases/0.10.0.rst | 48 ++++++++++++++++++++++++++++++++++ 1 file changed, 48 insertions(+) create mode 100644 doc/source/releases/0.10.0.rst diff --git a/doc/source/releases/0.10.0.rst b/doc/source/releases/0.10.0.rst new file mode 100644 index 000000000..e069676c2 --- /dev/null +++ b/doc/source/releases/0.10.0.rst @@ -0,0 +1,48 @@ +======================== +Neo 0.10.0 release notes +======================== + +9th July 2021 + + +Removal of Unit and ChannelIndex +-------------------------------- + + + +Supported Python and NumPy versions +----------------------------------- + +We no longer support Python 3.6, nor versions of NumPy older than 1.16. + + +Other new or modified features +------------------------------ + +TODO + +See all `pull requests`_ included in this release and the `list of closed issues`_. + + +New IO modules +-------------- + + * TODO + * TODO + +Bug fixes and improvements in IO modules +---------------------------------------- + + * TODO + * TODO + + +Acknowledgements +---------------- + +Thanks to Samuel Garcia, Julia Sprenger, Peter N. Steinmetz, Andrew Davison, Steffen Bürgers, +Regimantas Jurkus, Alessio Buccino, Shashwat Sridhar, Jeffrey Gill, Etienne Combrisson, +Ben Dichter and Elodie Legouée for their contributions to this release. + +.. _`list of closed issues`: https://github.com/NeuralEnsemble/python-neo/issues?q=is%3Aissue+milestone%3A0.10.0+is%3Aclosed +.. _`pull requests`: https://github.com/NeuralEnsemble/python-neo/pulls?q=is%3Apr+is%3Aclosed+merged%3A%3E2020-11-10+milestone%3A0.10.0 From 002b86725977e32ff166a772a349095014bd8171 Mon Sep 17 00:00:00 2001 From: sprenger Date: Thu, 22 Jul 2021 13:05:24 +0200 Subject: [PATCH 3/7] [doc] extend release notes --- doc/source/releases/0.10.0.rst | 25 +++++++++++++++++++------ 1 file changed, 19 insertions(+), 6 deletions(-) diff --git a/doc/source/releases/0.10.0.rst b/doc/source/releases/0.10.0.rst index e069676c2..4ecea4c2f 100644 --- a/doc/source/releases/0.10.0.rst +++ b/doc/source/releases/0.10.0.rst @@ -7,6 +7,8 @@ Neo 0.10.0 release notes Removal of Unit and ChannelIndex -------------------------------- +In version 0.9.0 :class:`Group` and :class:`ChannelView` replace :class:`Unit` and :class:`ChannelIndex`. +In this version the deprecated :class:`Unit` and :class:`ChannelIndex` are removed and only the new class:`Group` and :class:`ChannelView` objects are available. @@ -19,22 +21,32 @@ We no longer support Python 3.6, nor versions of NumPy older than 1.16. Other new or modified features ------------------------------ -TODO - See all `pull requests`_ included in this release and the `list of closed issues`_. + * SpikeTrain can now also be provided as two arrays: one containing spike times + and the other unit identities of the times (:class:`SpikeTrainList`) + * Object identity is now preserved when using utility time_slice methods New IO modules -------------- - * TODO - * TODO + * CEDIO - an alternative to spike2io + * AxonaIO + * OpenEphysIO + * PhyIO + * SpikeGLXIO + * NWBIO Bug fixes and improvements in IO modules ---------------------------------------- - * TODO - * TODO + * The NeuralynxIO was refactored and now supports new file versions (neuraview) and single file loading. + * Legacy versions of old IOs were removed for NeuralynxIO (neuralynxio_v1), BlackrockIO, NeoHdf5IO + * NixIOfr now supports array annotations of :class:`AnalogSignal`s. + * The IO modules of this release have been tested with version 0.1.0 of the + `ephy_testing_data`_ + * NSDFIO was removed + * all IOs now accept `pathlib.Path` objects Acknowledgements @@ -46,3 +58,4 @@ Ben Dichter and Elodie Legouée for their contributions to this release. .. _`list of closed issues`: https://github.com/NeuralEnsemble/python-neo/issues?q=is%3Aissue+milestone%3A0.10.0+is%3Aclosed .. _`pull requests`: https://github.com/NeuralEnsemble/python-neo/pulls?q=is%3Apr+is%3Aclosed+merged%3A%3E2020-11-10+milestone%3A0.10.0 +.. _`ephy_test_data`: https://gin.g-node.org/NeuralEnsemble/ephy_testing_data/src/v0.1.0 \ No newline at end of file From 3d63d794dad4ac210d08d573e904c4b26ed98c17 Mon Sep 17 00:00:00 2001 From: Samuel Garcia Date: Mon, 26 Jul 2021 17:21:07 +0200 Subject: [PATCH 4/7] samuel add --- doc/source/releases/0.10.0.rst | 13 +++++++++++-- 1 file changed, 11 insertions(+), 2 deletions(-) diff --git a/doc/source/releases/0.10.0.rst b/doc/source/releases/0.10.0.rst index 4ecea4c2f..67114a51a 100644 --- a/doc/source/releases/0.10.0.rst +++ b/doc/source/releases/0.10.0.rst @@ -32,10 +32,19 @@ New IO modules * CEDIO - an alternative to spike2io * AxonaIO - * OpenEphysIO + * OpenEphysIO - handle the binary format * PhyIO * SpikeGLXIO * NWBIO + * MaxwellIO + +RawIO modules +------------- + +Internal refactoring of the neo.rawio module about the channel grouping. +There is a signal_stream filed that handle channel groups for signal. +This enhanced the way annotation and array_annotaion are rendered at neo.io level. + Bug fixes and improvements in IO modules ---------------------------------------- @@ -58,4 +67,4 @@ Ben Dichter and Elodie Legouée for their contributions to this release. .. _`list of closed issues`: https://github.com/NeuralEnsemble/python-neo/issues?q=is%3Aissue+milestone%3A0.10.0+is%3Aclosed .. _`pull requests`: https://github.com/NeuralEnsemble/python-neo/pulls?q=is%3Apr+is%3Aclosed+merged%3A%3E2020-11-10+milestone%3A0.10.0 -.. _`ephy_test_data`: https://gin.g-node.org/NeuralEnsemble/ephy_testing_data/src/v0.1.0 \ No newline at end of file +.. _`ephy_test_data`: https://gin.g-node.org/NeuralEnsemble/ephy_testing_data/src/v0.1.0 From 0fec0406379ccd652284767ddecaccc030fd0049 Mon Sep 17 00:00:00 2001 From: Andrew Davison Date: Mon, 26 Jul 2021 17:52:30 +0200 Subject: [PATCH 5/7] Re-ordered sections in release notes to put the biggest changes first. --- doc/source/releases/0.10.0.rst | 72 +++++++++++++++++----------------- doc/source/releases/0.8.0.rst | 26 ++++++------ doc/source/releases/0.9.0.rst | 24 ++++++------ 3 files changed, 62 insertions(+), 60 deletions(-) diff --git a/doc/source/releases/0.10.0.rst b/doc/source/releases/0.10.0.rst index 67114a51a..ace0d8179 100644 --- a/doc/source/releases/0.10.0.rst +++ b/doc/source/releases/0.10.0.rst @@ -2,61 +2,62 @@ Neo 0.10.0 release notes ======================== -9th July 2021 +27th July 2021 + + +New IO modules +-------------- + +.. currentmodule:: neo.io + +* :class:`CedIO` - an alternative to :class:`Spike2IO` +* :class:`AxonaIO` +* :class:`OpenEphysIO` - handle the binary format +* :class:`PhyIO` +* :class:`SpikeGLXIO` +* :class:`NWBIO` - support for a subset of the `NWB:N`_ format +* :class:`MaxwellIO` + + +Bug fixes and improvements in IO modules +---------------------------------------- + +* :class:`NeuralynxIO` was refactored and now supports new file versions (neuraview) and single file loading. +* Legacy versions of old IOs were removed for NeuralynxIO (neuralynxio_v1), BlackrockIO, NeoHdf5IO. +* :class:`NixIOfr` now supports array annotations of :class:`AnalogSignal` objects. +* The IO modules of this release have been tested with version 0.1.0 of the `ephy_testing_data`_. +* :class:`NSDFIO` was removed because we can no longer maintain it. +* all IOs now accept :class:`pathlib.Path` objects. Removal of Unit and ChannelIndex -------------------------------- -In version 0.9.0 :class:`Group` and :class:`ChannelView` replace :class:`Unit` and :class:`ChannelIndex`. -In this version the deprecated :class:`Unit` and :class:`ChannelIndex` are removed and only the new class:`Group` and :class:`ChannelView` objects are available. +.. currentmodule:: neo.core +In version 0.9.0 :class:`Group` and :class:`ChannelView` were introduced, replacing :class:`Unit` and :class:`ChannelIndex`, which were deprecated. +In this version the deprecated :class:`Unit` and :class:`ChannelIndex` are removed and only the new :class:`Group` and :class:`ChannelView` objects are available. Supported Python and NumPy versions ----------------------------------- We no longer support Python 3.6, nor versions of NumPy older than 1.16. - Other new or modified features ------------------------------ -See all `pull requests`_ included in this release and the `list of closed issues`_. - * SpikeTrain can now also be provided as two arrays: one containing spike times - and the other unit identities of the times (:class:`SpikeTrainList`) - * Object identity is now preserved when using utility time_slice methods - - -New IO modules --------------- +* Lists of :class:`SpikeTrain` objects can now also be created from two arrays: one containing spike times + and the other unit identities of the times (:class:`SpikeTrainList`). +* Object identity is now preserved when using utility :func:`time_slice()` methods. - * CEDIO - an alternative to spike2io - * AxonaIO - * OpenEphysIO - handle the binary format - * PhyIO - * SpikeGLXIO - * NWBIO - * MaxwellIO +See all `pull requests`_ included in this release and the `list of closed issues`_. RawIO modules ------------- Internal refactoring of the neo.rawio module about the channel grouping. -There is a signal_stream filed that handle channel groups for signal. -This enhanced the way annotation and array_annotaion are rendered at neo.io level. - - -Bug fixes and improvements in IO modules ----------------------------------------- - - * The NeuralynxIO was refactored and now supports new file versions (neuraview) and single file loading. - * Legacy versions of old IOs were removed for NeuralynxIO (neuralynxio_v1), BlackrockIO, NeoHdf5IO - * NixIOfr now supports array annotations of :class:`AnalogSignal`s. - * The IO modules of this release have been tested with version 0.1.0 of the - `ephy_testing_data`_ - * NSDFIO was removed - * all IOs now accept `pathlib.Path` objects - +There is a signal_stream field that handles channel groups for signals. +This enhances the way the :attr:`annotation` and :attr:`array_annotation` attributes are rendered at neo.io level. Acknowledgements ---------------- @@ -67,4 +68,5 @@ Ben Dichter and Elodie Legouée for their contributions to this release. .. _`list of closed issues`: https://github.com/NeuralEnsemble/python-neo/issues?q=is%3Aissue+milestone%3A0.10.0+is%3Aclosed .. _`pull requests`: https://github.com/NeuralEnsemble/python-neo/pulls?q=is%3Apr+is%3Aclosed+merged%3A%3E2020-11-10+milestone%3A0.10.0 -.. _`ephy_test_data`: https://gin.g-node.org/NeuralEnsemble/ephy_testing_data/src/v0.1.0 +.. _`ephy_testing_data`: https://gin.g-node.org/NeuralEnsemble/ephy_testing_data/src/v0.1.0 +.. _`NWB:N`: https://www.nwb.org/nwb-neurophysiology/ \ No newline at end of file diff --git a/doc/source/releases/0.8.0.rst b/doc/source/releases/0.8.0.rst index 62c2b0866..05fd6a095 100644 --- a/doc/source/releases/0.8.0.rst +++ b/doc/source/releases/0.8.0.rst @@ -70,25 +70,25 @@ returning an :class:`AnalogSignal` object:: Other new features ------------------ - * new neo.utils module - * Numpy 1.16+ compatibility - * :meth:`time_shift()` method for :class:`Epoch`/:class:`Event`/:class:`AnalogSignal` - * :meth:`time_slice()` method is now more robust - * dropped support for Python 3.4 +* new neo.utils module +* Numpy 1.16+ compatibility +* :meth:`time_shift()` method for :class:`Epoch`/:class:`Event`/:class:`AnalogSignal` +* :meth:`time_slice()` method is now more robust +* dropped support for Python 3.4 See all `pull requests`_ included in this release and the `list of closed issues`_. Bug fixes and improvements in IO modules ---------------------------------------- - * Blackrock - * Neuroshare - * NixIOFr - * NixIO (array annotation + 1d coordinates) - * AsciiSignal (fix + json metadata + IrregularlySampledSignals + write proxy) - * Spike2 (group same sampling rate) - * Brainvision - * NeuralynxIO +* Blackrock +* Neuroshare +* NixIOFr +* NixIO (array annotation + 1d coordinates) +* AsciiSignal (fix + json metadata + IrregularlySampledSignals + write proxy) +* Spike2 (group same sampling rate) +* Brainvision +* NeuralynxIO .. Warning:: Some IOs (based on rawio) when loading can choose to split each channel into its own 1-channel :class:`AnalogSignal` or to group them diff --git a/doc/source/releases/0.9.0.rst b/doc/source/releases/0.9.0.rst index c750ad783..17194323e 100644 --- a/doc/source/releases/0.9.0.rst +++ b/doc/source/releases/0.9.0.rst @@ -54,24 +54,24 @@ To get the "multiple single-channel signals" behaviour, use:: Other new or modified features ------------------------------ - * added methods :func:`rectify()`, :func:`downsample` and :func:`resample` to :class:`AnalogSignal` - * :func:`SpikeTrain.merge()` can now merge multiple spiketrains - * the utility function :func:`cut_block_by_epochs()` gives a new :class:`Block` now - rather than modifying the block in place - * some missing properties such as ``t_start`` were added to :class:`ImageSequence`, - and ``sampling_period`` was renamed to ``frame_duration`` - * :func:`AnalogSignal.time_index()` now accepts arrays of times, not just a scalar. +* added methods :func:`rectify()`, :func:`downsample` and :func:`resample` to :class:`AnalogSignal` +* :func:`SpikeTrain.merge()` can now merge multiple spiketrains +* the utility function :func:`cut_block_by_epochs()` gives a new :class:`Block` now + rather than modifying the block in place +* some missing properties such as ``t_start`` were added to :class:`ImageSequence`, + and ``sampling_period`` was renamed to ``frame_duration`` +* :func:`AnalogSignal.time_index()` now accepts arrays of times, not just a scalar. See all `pull requests`_ included in this release and the `list of closed issues`_. Bug fixes and improvements in IO modules ---------------------------------------- - * NeoMatlabIO (support for signal annotations) - * NeuralynxIO (fix handling of empty .nev files) - * AxonIO (support EDR3 header, fix channel events bug) - * Spike2IO (fix rounding problem, fix for v9 SON files) - * MicromedIO (fix label encoding) +* NeoMatlabIO (support for signal annotations) +* NeuralynxIO (fix handling of empty .nev files) +* AxonIO (support EDR3 header, fix channel events bug) +* Spike2IO (fix rounding problem, fix for v9 SON files) +* MicromedIO (fix label encoding) Acknowledgements From 4168aa002ceed935c31dfd693defcea31d20d5d5 Mon Sep 17 00:00:00 2001 From: Garcia Samuel Date: Tue, 27 Jul 2021 10:00:05 +0200 Subject: [PATCH 6/7] Update doc/source/releases/0.10.0.rst Co-authored-by: Julia Sprenger --- doc/source/releases/0.10.0.rst | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/doc/source/releases/0.10.0.rst b/doc/source/releases/0.10.0.rst index ace0d8179..34a301d9c 100644 --- a/doc/source/releases/0.10.0.rst +++ b/doc/source/releases/0.10.0.rst @@ -55,8 +55,8 @@ See all `pull requests`_ included in this release and the `list of closed issues RawIO modules ------------- -Internal refactoring of the neo.rawio module about the channel grouping. -There is a signal_stream field that handles channel groups for signals. +Internal refactoring of the neo.rawio module regarding channel grouping. +Now the concept of a signal stream is used to handle channel groups for signals. This enhances the way the :attr:`annotation` and :attr:`array_annotation` attributes are rendered at neo.io level. Acknowledgements @@ -69,4 +69,4 @@ Ben Dichter and Elodie Legouée for their contributions to this release. .. _`list of closed issues`: https://github.com/NeuralEnsemble/python-neo/issues?q=is%3Aissue+milestone%3A0.10.0+is%3Aclosed .. _`pull requests`: https://github.com/NeuralEnsemble/python-neo/pulls?q=is%3Apr+is%3Aclosed+merged%3A%3E2020-11-10+milestone%3A0.10.0 .. _`ephy_testing_data`: https://gin.g-node.org/NeuralEnsemble/ephy_testing_data/src/v0.1.0 -.. _`NWB:N`: https://www.nwb.org/nwb-neurophysiology/ \ No newline at end of file +.. _`NWB:N`: https://www.nwb.org/nwb-neurophysiology/ From ec7fc1d557f5c5dbb4b5db137085cbe5a82bd4f2 Mon Sep 17 00:00:00 2001 From: Garcia Samuel Date: Tue, 27 Jul 2021 10:00:27 +0200 Subject: [PATCH 7/7] Update doc/source/releases/0.10.0.rst Co-authored-by: Julia Sprenger --- doc/source/releases/0.10.0.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/doc/source/releases/0.10.0.rst b/doc/source/releases/0.10.0.rst index 34a301d9c..5f2ad6cbd 100644 --- a/doc/source/releases/0.10.0.rst +++ b/doc/source/releases/0.10.0.rst @@ -25,9 +25,9 @@ Bug fixes and improvements in IO modules * :class:`NeuralynxIO` was refactored and now supports new file versions (neuraview) and single file loading. * Legacy versions of old IOs were removed for NeuralynxIO (neuralynxio_v1), BlackrockIO, NeoHdf5IO. * :class:`NixIOfr` now supports array annotations of :class:`AnalogSignal` objects. -* The IO modules of this release have been tested with version 0.1.0 of the `ephy_testing_data`_. * :class:`NSDFIO` was removed because we can no longer maintain it. * all IOs now accept :class:`pathlib.Path` objects. +* The IO modules of this release have been tested with version 0.1.0 of the `ephy_testing_data`_. Removal of Unit and ChannelIndex