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CO_331:0000718 definition does not match name and synonyms #62

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bellerbrock opened this issue May 24, 2018 · 3 comments
Open

CO_331:0000718 definition does not match name and synonyms #62

bellerbrock opened this issue May 24, 2018 · 3 comments
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@bellerbrock
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Is it a temperature or a salt trait?

Term id CO_331:0000718
Term name Reaction to high soil temperature estimating 1-9
Term definition Response of a plant to damage by high concentration salt. 1 = Very low, 3 = Low, 5 = Intermediate, 7 = High, 9 = Very High
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Synoyms
RnSTp_Et_1to9
SOILTEMP
"RnSTp_Et_1to9" EXACT []
"SOILTEMP" EXACT []

@bellerbrock
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Looks like CO_331:0000715 Reaction to salinity estimating 1-9 is the salt trait, just need to fix the definition for CO_331:0000718

@cooperl09
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The term id: CO_331:0000718 is a variable, not a trait, and the stanza in the OBO file shows a different term name than you show above.
It is composed of the trait: CO_331:0000354 ! sweetpotato reaction to high soil temperature trait
and the method- (note typo in method name)

id: CO_331:0000718
name: sweetpotato rnstp_et_1to9 variable
synonym: "SOILTEMP" EXACT []
is_a: CO_331:0000354 ! sweetpotato reaction to high soil temperature trait
relationship: variable_of CO_331:0000354 ! sweetpotato reaction to high soil temperature trait
relationship: variable_of CO_331:0000470 ! sweetpotato visual estimation of the plant response to hight soil temperature (40 °c) method
relationship: variable_of CO_331:0000588 ! sweetpotato rctstp 5 pt. scale

It is the definition of CO_331:0000354 which needs to be fixed:
id: CO_331:0000354
name: sweetpotato reaction to high soil temperature trait
def: "Response of a plant to damage by high concentration salt" [CO:curators]
synonym: "RnSTp" EXACT []
is_a: TO:0000259 ! heat tolerance

@cooperl09
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Likewise, CO_331:0000715 Reaction to salinity estimating 1-9 is the variable for the salinity tolerance term:

id: CO_331:0000715
name: sweetpotato rnslt_et_1to9 variable
synonym: "SALINITY" EXACT []
is_a: CO_331:0000351 ! sweetpotato reaction to salinity trait
relationship: variable_of CO_331:0000351 ! sweetpotato reaction to salinity trait
relationship: variable_of CO_331:0000467 ! sweetpotato visual estimation of the plant response to soil with salinity levels of more 8 mm/cm method
relationship: variable_of CO_331:0000585 ! sweetpotato rctsty 5 pt. scale

@cooperl09 cooperl09 added the bug label Jul 20, 2018
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