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poetry.lock
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poetry.lock
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[[package]]
name = "biopython"
version = "1.81"
description = "Freely available tools for computational molecular biology."
category = "main"
optional = false
python-versions = ">=3.7"
[package.dependencies]
numpy = "*"
[[package]]
name = "click"
version = "8.1.3"
description = "Composable command line interface toolkit"
category = "main"
optional = false
python-versions = ">=3.7"
[package.dependencies]
colorama = {version = "*", markers = "platform_system == \"Windows\""}
[[package]]
name = "colorama"
version = "0.4.6"
description = "Cross-platform colored terminal text."
category = "main"
optional = false
python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
[[package]]
name = "exceptiongroup"
version = "1.1.1"
description = "Backport of PEP 654 (exception groups)"
category = "main"
optional = false
python-versions = ">=3.7"
[package.extras]
test = ["pytest (>=6)"]
[[package]]
name = "iniconfig"
version = "2.0.0"
description = "brain-dead simple config-ini parsing"
category = "main"
optional = false
python-versions = ">=3.7"
[[package]]
name = "jedi"
version = "0.18.2"
description = "An autocompletion tool for Python that can be used for text editors."
category = "dev"
optional = false
python-versions = ">=3.6"
[package.dependencies]
parso = ">=0.8.0,<0.9.0"
[package.extras]
docs = ["Jinja2 (==2.11.3)", "MarkupSafe (==1.1.1)", "Pygments (==2.8.1)", "alabaster (==0.7.12)", "babel (==2.9.1)", "chardet (==4.0.0)", "commonmark (==0.8.1)", "docutils (==0.17.1)", "future (==0.18.2)", "idna (==2.10)", "imagesize (==1.2.0)", "mock (==1.0.1)", "packaging (==20.9)", "pyparsing (==2.4.7)", "pytz (==2021.1)", "readthedocs-sphinx-ext (==2.1.4)", "recommonmark (==0.5.0)", "requests (==2.25.1)", "six (==1.15.0)", "snowballstemmer (==2.1.0)", "sphinx-rtd-theme (==0.4.3)", "sphinx (==1.8.5)", "sphinxcontrib-serializinghtml (==1.1.4)", "sphinxcontrib-websupport (==1.2.4)", "urllib3 (==1.26.4)"]
qa = ["flake8 (==3.8.3)", "mypy (==0.782)"]
testing = ["Django (<3.1)", "attrs", "colorama", "docopt", "pytest (<7.0.0)"]
[[package]]
name = "numpy"
version = "1.24.3"
description = "Fundamental package for array computing in Python"
category = "main"
optional = false
python-versions = ">=3.8"
[[package]]
name = "packaging"
version = "23.1"
description = "Core utilities for Python packages"
category = "main"
optional = false
python-versions = ">=3.7"
[[package]]
name = "parso"
version = "0.8.3"
description = "A Python Parser"
category = "dev"
optional = false
python-versions = ">=3.6"
[package.extras]
qa = ["flake8 (==3.8.3)", "mypy (==0.782)"]
testing = ["docopt", "pytest (<6.0.0)"]
[[package]]
name = "pluggy"
version = "1.0.0"
description = "plugin and hook calling mechanisms for python"
category = "main"
optional = false
python-versions = ">=3.6"
[package.extras]
dev = ["pre-commit", "tox"]
testing = ["pytest", "pytest-benchmark"]
[[package]]
name = "plumbum"
version = "1.8.1"
description = "Plumbum: shell combinators library"
category = "main"
optional = false
python-versions = ">=3.6"
[package.dependencies]
pywin32 = {version = "*", markers = "platform_system == \"Windows\" and platform_python_implementation != \"PyPy\""}
[package.extras]
dev = ["paramiko", "psutil", "pytest-cov", "pytest-mock", "pytest-timeout", "pytest (>=6.0)"]
docs = ["sphinx-rtd-theme (>=1.0.0)", "sphinx (>=4.0.0)"]
ssh = ["paramiko"]
[[package]]
name = "pudb"
version = "2022.1.3"
description = "A full-screen, console-based Python debugger"
category = "dev"
optional = false
python-versions = "~=3.6"
[package.dependencies]
jedi = ">=0.18,<1"
packaging = ">=20.0"
pygments = ">=2.7.4"
urwid = ">=1.1.1"
urwid_readline = "*"
[package.extras]
completion = ["shtab"]
[[package]]
name = "pygments"
version = "2.15.1"
description = "Pygments is a syntax highlighting package written in Python."
category = "dev"
optional = false
python-versions = ">=3.7"
[package.extras]
plugins = ["importlib-metadata"]
[[package]]
name = "pytest"
version = "7.3.1"
description = "pytest: simple powerful testing with Python"
category = "main"
optional = false
python-versions = ">=3.7"
[package.dependencies]
colorama = {version = "*", markers = "sys_platform == \"win32\""}
exceptiongroup = {version = ">=1.0.0rc8", markers = "python_version < \"3.11\""}
iniconfig = "*"
packaging = "*"
pluggy = ">=0.12,<2.0"
tomli = {version = ">=1.0.0", markers = "python_version < \"3.11\""}
[package.extras]
testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "xmlschema"]
[[package]]
name = "pywin32"
version = "306"
description = "Python for Window Extensions"
category = "main"
optional = false
python-versions = "*"
[[package]]
name = "tomli"
version = "2.0.1"
description = "A lil' TOML parser"
category = "main"
optional = false
python-versions = ">=3.7"
[[package]]
name = "typer"
version = "0.9.0"
description = "Typer, build great CLIs. Easy to code. Based on Python type hints."
category = "main"
optional = false
python-versions = ">=3.6"
[package.dependencies]
click = ">=7.1.1,<9.0.0"
typing-extensions = ">=3.7.4.3"
[package.extras]
all = ["colorama (>=0.4.3,<0.5.0)", "shellingham (>=1.3.0,<2.0.0)", "rich (>=10.11.0,<14.0.0)"]
dev = ["autoflake (>=1.3.1,<2.0.0)", "flake8 (>=3.8.3,<4.0.0)", "pre-commit (>=2.17.0,<3.0.0)"]
doc = ["mkdocs (>=1.1.2,<2.0.0)", "mkdocs-material (>=8.1.4,<9.0.0)", "mdx-include (>=1.4.1,<2.0.0)", "pillow (>=9.3.0,<10.0.0)", "cairosvg (>=2.5.2,<3.0.0)"]
test = ["shellingham (>=1.3.0,<2.0.0)", "pytest (>=4.4.0,<8.0.0)", "pytest-cov (>=2.10.0,<5.0.0)", "coverage (>=6.2,<7.0)", "pytest-xdist (>=1.32.0,<4.0.0)", "pytest-sugar (>=0.9.4,<0.10.0)", "mypy (==0.910)", "black (>=22.3.0,<23.0.0)", "isort (>=5.0.6,<6.0.0)", "rich (>=10.11.0,<14.0.0)"]
[[package]]
name = "typing-extensions"
version = "4.5.0"
description = "Backported and Experimental Type Hints for Python 3.7+"
category = "main"
optional = false
python-versions = ">=3.7"
[[package]]
name = "urwid"
version = "2.1.2"
description = "A full-featured console (xterm et al.) user interface library"
category = "dev"
optional = false
python-versions = "*"
[[package]]
name = "urwid-readline"
version = "0.13"
description = "A textbox edit widget for urwid that supports readline shortcuts"
category = "dev"
optional = false
python-versions = "*"
[package.dependencies]
urwid = "*"
[package.extras]
dev = ["black", "pytest"]
[metadata]
lock-version = "1.1"
python-versions = "^3.9"
content-hash = "696535937c38ca77fc0f1bc6b1d9738cffd1edb42a66360c011e74cee8d83a61"
[metadata.files]
biopython = []
click = []
colorama = []
exceptiongroup = []
iniconfig = []
jedi = []
numpy = []
packaging = []
parso = []
pluggy = []
plumbum = []
pudb = []
pygments = []
pytest = []
pywin32 = []
tomli = []
typer = []
typing-extensions = []
urwid = []
urwid-readline = []