Three nationwide or europe-wide projects offer and support solutions for metabolomic data analysis integrated in the Galaxy framework.
Location: France
Aim: build, test and provide workflows for metabolomics data analysis in Galaxy
Current Status: solutions for different experiment types exist (LC-MS, GC-MS, NMR)
Accessibility: public server (registration required), local installation possible
Support:
- some WFs and tutorials with high quality exist, actively developed
- W4M Tutorials as PDFs are here
- post problems on GitHub
Location: Germany
Aim: build, test and provide new tools for mass spectrometry
Current Status: tools for different experiment types exist (LC-MS, GC-MS, NMR)
Accessibility: tools can be easily imported in any Galaxy server
Support:
- a single WF / tutorial on
UPLC-MS based, label-free quantitationexists - post problems on the mailing list ([email protected]) or on GitHub
Literature:
- Kenar, 2014, Mol Cell Proteomics
- Ranninger, 2016, Anal Chim Acta
- Ranninger, 2015, J Biol Chem
Location: Europe (Halle)
Aim: build, test and provide metabolomics solutions in Galaxy
Current Status: solutions for different experiment types exist (mainly NMR, but also LC-MS and GC-MS)
Accessibility:
- public server (registration required), can also run locally
- OMS tools and / or W4M tools and / or your favorite tools can be integrated
Support:
- no WFs / tutorials exist
- Highly interested in giving feedback on specific problems and to adjust their server to your needs
- post problems primarily on this page or, alternatively, on the PhenoMeNal GitHub page