how to generate the heat map plot of the modules ?

[Flu09]

Hello, I often see this heatmap in papers. I am not sure how to generate something similar. Also How to generate the motif plots. Thank you.

[SeppeDeWinter]

Hi @Flu09

About which aspect are you unsure, the actual plotting of the heatmap or how to acquire the regulon AUC values that are being plotted?

Could you clarify what you mean by "the motif plots"?

All the best,

Seppe

[Sirin24]

@SeppeDeWinter The actual plotting please if possible. For me I do have the AUC values but I just do not understand how this heatmap was generated.

[Flu09]

I was asking about the actual mapping of the CSI plot as I could not find it anywhere in the documentation.

[SJTU-wyk]

me to!!!! I really want to learn some heatmap of regulon generated by SCENIC in R!