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Make --allstages output as expected #168

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mikolmogorov opened this issue Jul 6, 2014 · 0 comments
Open

Make --allstages output as expected #168

mikolmogorov opened this issue Jul 6, 2014 · 0 comments
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Current: --allstages outputs "blocks_coordsN.txt" after each graph simplification step. But the last Nth file is output after Nth simplification step AND N+1th synteny block recovery step.

Excpected: last "coords" file corresponds to last simplification step but before N+1th graph construction. Also, we can output results after this final filtration (including coverage and permutations files)
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@iminkin @mikolmogorov