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deletion starting at beginning of contig has position 0 in vcf instead of 1 #190

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kcamnairb opened this issue Dec 10, 2020 · 0 comments
Open

deletion starting at beginning of contig has position 0 in vcf instead of 1 #190

kcamnairb opened this issue Dec 10, 2020 · 0 comments

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@kcamnairb
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I noticed that a deletion in the query sequence that matches the beginning of the reference contig has position of 0 in the vcf output of C-Sibelia. Since vcf is a 1-based format, shouldn't this have a position of 1 instead?

Brian
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@kcamnairb