infernal does not contan cmscore since version 1.1

[tillea]

Hi,
while trying to run unit tests while doing the bioperl-run Debian package I relaised that the Perl wrapper frequently calls cmscore. However, when looking at the infernal changelog of the Debian package since version 1.1~rc2 (dated 01 May 2013) it says

  cmscore no longer available

I'd recommend to reflect this in the wrapper code.
Kind regards, Andreas.

[cjfields]

I'll have a look, I'm not quite sure how extensive the changes would be if (for example) cmscore is being used internally (shame since I should know this, I wrote the code 👍 )