Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Who uses Cytoscape.js? #914

Open
maxkfranz opened this issue Apr 24, 2015 · 127 comments
Open

Who uses Cytoscape.js? #914

maxkfranz opened this issue Apr 24, 2015 · 127 comments

Comments

@maxkfranz
Copy link
Member

It would be nice to include a list of organisations that use Cytoscape.js in the docs.

Please include:

  • Organisation name
  • Link to organisation site
@danieljue
Copy link

DARPA XDATA / Sotera Defense Solutions, Inc.
http://sotera.github.io/graphene/
http://www.darpa.mil/opencatalog/xdata.html

@maxkfranz
Copy link
Member Author

Pathway Commons
http://www.pathwaycommons.org

@maxkfranz
Copy link
Member Author

NDEx
http://home.ndexbio.org/

@maxkfranz
Copy link
Member Author

Later:

GeneMANIA
http://genemania.org

@keiono
Copy link
Member

keiono commented Apr 28, 2015

Also, we are using it:

CyNetShare

http://cynetshare.ucsd.edu/

@ktei
Copy link
Contributor

ktei commented May 10, 2015

InfoTrack
http://www.infotrack.com.au/

@starkfree
Copy link

@ghost
Copy link

ghost commented May 12, 2015

dSysMap
http://dsysmap.irbbarcelona.org

@EDreven
Copy link

EDreven commented Jun 4, 2015

video instruction.
http://www.kartoteka.ru/vizual
The module itself is not free.

@keiono
Copy link
Member

keiono commented Jun 4, 2015

It's still in beta, but our embedded Jupyter (IPython) Notebook widget uses cytoscape.js:

https://github.com/idekerlab/py2cytoscape

@maxkfranz
Copy link
Member Author

Intermine : University of Cambridge : http://intermine.org/

https://twitter.com/intermineorg/status/664410088623489024

@maxkfranz
Copy link
Member Author

@maxruby
Copy link

maxruby commented Dec 12, 2015

Visual Interaction GmbH: http://www.mygaze.com

@patbuergin-zz
Copy link

GIGRAPH – Network Visualization for Excel
https://gigraph.io
(non-commercial, private project)

@mabossert
Copy link

I use at Cray inc. as part of a front-end analytics application run on our supercomputers.
http://www.cray.com

@danmaclean
Copy link

PINet - http://pinet.tsl.ac.uk
Tool for The Sainsbury Laboratory network analyses

@YMA-MDL
Copy link

YMA-MDL commented Feb 12, 2016

Ganister - http://www.ganister.eu/
Configuration management solution for Electronic/HighTech/Defense&Security companies

@maxkfranz
Copy link
Member Author

maxkfranz added a commit that referenced this issue Feb 25, 2016
@AoDev
Copy link

AoDev commented Mar 19, 2016

Trace: https://trace.risingstack.com/

Microservices Visualized
Anomaly detection, distributed transaction tracking and process monitoring for your services.

@michalhabala
Copy link
Contributor

Graphlytic - Graph BI platform
http://graphlytic.sk/

@jfreyreg
Copy link

Abasy Atlas: A comprehensive atlas of systems, global network properties, and system-level elements shaping regulatory networks across bacteria
http://abasy.ccg.unam.mx

@diegoalonso78
Copy link

APID - Agile Protein Interactomes DataServer
http://apid.dep.usal.es
Example: http://cicblade.dep.usal.es:8080/APID/InteractionsNetworkApp.action?protein=P26951

@narseo
Copy link

narseo commented Jun 8, 2016

ICSI Haystack Project to show tracking activity on mobile apps:

https://haystack.mobi/panopticon/

@Malalama
Copy link

Malalama commented Jun 9, 2016

A friend and I have been working on Musicalized, a Family Tree of All Music Genres:

http://en.musicalized.com/full

Happy to receive some feedback!

@maxkfranz maxkfranz self-assigned this Jun 10, 2016
@maxkfranz maxkfranz removed their assignment Jun 30, 2022
@lkarlslund
Copy link

My project Adalanche uses Cytoscape.js for visualizing attack paths in Active Directory (and other) systems.

https://github.com/lkarlslund/Adalanche

@sveinp
Copy link

sveinp commented Aug 31, 2022

T-rank uses Cytoscape for visualizing shareholder networks.

image

@anwaarulmustafa
Copy link

Organization Name: DGB Technologies
Website Link: https://www.dgbtek.com

@marlondumas
Copy link

Organization Name: Apromore
Website Link: https://apromore.com/
Example visualization: https://documentation.apromore.org/_images/220.png

@atakanahmetce
Copy link

Organization Name: CanSyL
Website Link: https://crossbar.kansil.org/
Example: https://crossbar.kansil.org/covid19_simplified.php

maxkfranz added a commit that referenced this issue Jan 11, 2023
maxkfranz added a commit that referenced this issue Jan 11, 2023
@maxkfranz maxkfranz pinned this issue Apr 18, 2023
@mreichhoff
Copy link

HanziGraph (an educational tool for learners of Chinese and Japanese) uses CytoscapeJS. It's been recommended in a few places; also see the demo.

Website Link: https://hanzigraph.com
Repo: https://github.com/mreichhoff/HanziGraph

Thanks for the great library!

@fsmunoz
Copy link

fsmunoz commented May 14, 2023

The Budō Lineage Tree is a project I've just announced, and whose user-facing component is entirely based on Cytoscape.js . It parses a YAML based database (open to community input) of martial arts practitioners and their teachers and styles, and create a CYJS file, which is then visualised through the site using Cytoscape.js

image

Website: https://budotree.judoc.org/
Organisation: Frederico Muñoz, The Judo Documentation Project

@leecalcote
Copy link

Organization: Layer5
Project: Meshery

Thanks for all the work you do, @maxkfranz

maxkfranz added a commit that referenced this issue Sep 26, 2023
Add Layer5 & Meshery

Ref: Who uses Cytoscape.js? #914
@paulvb
Copy link

paulvb commented Nov 19, 2023

Organization: Companytracker
Website: https://www.companytracker.be/en

We use it to visualise relations between belgian businesses.

Thanks a lot for the great library, it covered everything that we needed!

companytracker-graph

maxkfranz added a commit that referenced this issue Nov 23, 2023
@artturimatias
Copy link

Organization: Open Science Centre of University of Jyväskylä
Website: https://osc.jyu.fi/en
KuKaKo is a visual, open source tool for communicating (sometimes messy) connections between people and things in community. Cytoscape.js is used for rendering organisation graph.
github: https://github.com/OSC-JYU/KuKaKo
Screenshot from 2023-09-18 16-14-22

Thanks!

maxkfranz added a commit that referenced this issue Dec 1, 2023
@sidharthv96
Copy link

Organization: Mermaid-JS
Project: Mermaid

We currently use Cytoscape for Mindmaps, but considering adopting it as the default layout engine to replace dagre.

@ExtReMLapin
Copy link

Arcade DB uses it for it's graph database

@ShriramVaradachari
Copy link

It would be nice to include a list of organisations that use Cytoscape.js in the docs.

Please include:

  • Organisation name
  • Link to organisation site

Organization - Stradegi Solutions
Link to website - www.nflows.com

maxkfranz added a commit that referenced this issue Jul 22, 2024
maxkfranz added a commit that referenced this issue Jul 22, 2024
@maxkfranz maxkfranz removed the pinned A long-lived issue, such as a discussion label Aug 14, 2024
@gxara
Copy link

gxara commented Sep 5, 2024

NodeLand
Link to website - nodeland.io

It is a SaaS for note-taking and mind-mapping

@sighrobot
Copy link

Organization: Orchidex
Website: https://orchidex.org

We use Cytoscape.js + dagre for ancestry visualizations; also currently experimenting with other layouts for future visualizations

Screenshot 2024-09-22 at 3 41 01 PM

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests