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Plan to overhaul this repository #95

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cmungall opened this issue Feb 22, 2023 · 3 comments
Open
1 of 5 tasks

Plan to overhaul this repository #95

cmungall opened this issue Feb 22, 2023 · 3 comments

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@cmungall
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cmungall commented Feb 22, 2023

geneontology was a good initial host but it probably makes sense to decouple. We originally had https://github.com/owlcollab/ which is where the oboformat standard lives.

the other items could be taken care of by adopting the linkml schema for obographs in OAK

@julesjacobsen
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When you say 'make it easier to maintain the java' do you mean 'refactor the FromOwl class' or 're-implement the immutables-based serialisation model'?

@julesjacobsen
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find out how https://github.com/geneontology/obographs/tree/master/schema json-schemas are generated

These are auto-generated from the Jackson annotations on the obographs-model classes by the test class obographs-core/src/test/java/org/geneontology/obographs/core/io/OgSchemaGeneratorTest.java

@julesjacobsen
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See also issue #104

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