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SBC and various test quantities

Simulations for the paper "Simulation-Based Calibration Checking for Bayesian Computation: The Choice of Test Quantities Shapes Sensitivity". Written in R markdown, using the SBC R package. Code is written in R markdown (.Rmd), rendered HTML can be found at https://martinmodrak.github.io/sbc_test_quantities_paper.

Contents:

  • mvn.Rmd - the multivariate normal examples for the main body of the paper (Section 4 - Numerical Experiments)
  • ordered_simplex.Rmd - the implementations of ordered simplex for the main body of the paper (Section 5 - Real-world case study)
  • bernoulli.Rmd - Examples in the Appendix B

The code uses renv to recreate the same environment as we used to run the examples. Run renv::restore() after loading the project.

The rendered site can be rebuilt with rmarkdown::render_site().