Update api_gui.md for Berkeley schema and deploy to documentation website

[aclum]

In particular the mentions to Activity should be removed in favor of WorkflowExecution. Depends on updates to the activity endpoints. It would be good to start a branch for berkeley so we can have the nmdc-runtime's berkeley branch point to a branch in NMDC_documentation that contains the updated text.

[brynnz22]

Sounds good. I'll work on this. Thanks!

[mslarae13]

@brynnz22 can you add why this is blocked & what needs to happen or decisions that need made to unblock?

[brynnz22]

@mslarae13 I don't think this is blocked. It depends on that other PR Alicia linked, but I can start updating the documentation.

[aclum]

The endpoints that reference 'Activity' need to have finalized new names, see hyperlinked ticket in the description.

[brynnz22]

Linking this new issue: microbiomedata/nmdc-runtime#653. While updating the docs, realized the old activity endpoints allowed a user to search both WorkflowExecution and PlannedProcess which allowed searching OmicsProcessing(now DataGeneration and MaterialProcessing collections). Will wait to update API docs based on this issue.

[mslarae13]

Thanks @brynnz22 so
Criteria for unblock,

• Complete berkeley: Change workflow_executions endpoints to be planned_process nmdc-runtime#653

[brynnz22]

Just your second bullet point is the criteria for unblock. The first bullet point should come after I complete this issue.

[eecavanna]

Related: #70

[mslarae13]

is this post refactor rollout eligible? (AKA, not MVP?)

[eecavanna]

Hi @mslarae13, I don't think so. The content updates are done (in PR #70) — they just haven't been deployed yet. We're deliberately waiting until "switchover" day before deploying them.

[ssarrafan]

@mslarae13 @brynnz22 since #653 is closed can this issue be closed too?

[brynnz22]

No its not done until its merged, and it can't be merged in until after the Berkeley stuff. I put it in the post roll out bin.