diff --git a/mbin_nmdc.wdl b/mbin_nmdc.wdl index 3670fe0..d88950c 100755 --- a/mbin_nmdc.wdl +++ b/mbin_nmdc.wdl @@ -61,7 +61,7 @@ workflow nmdc_mags { gtdbtk_env = gtdbtk_db, checkm_env = checkm_db, eukcc2_env = eukcc2_db, - map_file = stage.map_file, + map_file = stage.map_tsv, mbin_container = container } call package { @@ -303,7 +303,7 @@ task stage { File product_names = "products.tsv" File gene_phylogeny = "gene_phylogeny.tsv" File lineage_tsv = "lineage.tsv" - File? map_file = map_out + File? map_tsv = map_out String start = read_string("start.txt") } runtime {