From 4e06c6581e2e241817eceacbf8335fb80afa34b0 Mon Sep 17 00:00:00 2001 From: Sebastian Fischer Date: Wed, 18 Oct 2023 14:14:28 +0200 Subject: [PATCH 1/6] update renv version --- mlr-org/.Rprofile | 3 ++- mlr-org/renv.lock | 4 +--- mlr-org/renv/activate.R | 2 +- 3 files changed, 4 insertions(+), 5 deletions(-) diff --git a/mlr-org/.Rprofile b/mlr-org/.Rprofile index 81b960f5..01437422 100644 --- a/mlr-org/.Rprofile +++ b/mlr-org/.Rprofile @@ -1 +1,2 @@ -source("renv/activate.R") +s +options("install.opts" = "--without-keep.source") diff --git a/mlr-org/renv.lock b/mlr-org/renv.lock index 7afc76d0..3bb99ca3 100644 --- a/mlr-org/renv.lock +++ b/mlr-org/renv.lock @@ -3793,10 +3793,8 @@ }, "renv": { "Package": "renv", - "Version": "0.16.0", + "Version": "1.0.3", "Source": "Repository", - "Repository": "RSPM", - "Hash": "c9e8442ab69bc21c9697ecf856c1e6c7", "Requirements": [] }, "repr": { diff --git a/mlr-org/renv/activate.R b/mlr-org/renv/activate.R index 019b5a66..a00f7813 100644 --- a/mlr-org/renv/activate.R +++ b/mlr-org/renv/activate.R @@ -2,7 +2,7 @@ local({ # the requested version of renv - version <- "0.16.0" + version <- "1.0.3" # the project directory project <- getwd() From 3d7191fcfb112be2d7d4bcc5e9968a64961e5329 Mon Sep 17 00:00:00 2001 From: Sebastian Fischer Date: Fri, 20 Oct 2023 11:19:03 +0200 Subject: [PATCH 2/6] fix typo --- mlr-org/.Rprofile | 1 - 1 file changed, 1 deletion(-) diff --git a/mlr-org/.Rprofile b/mlr-org/.Rprofile index 01437422..42a28ce9 100644 --- a/mlr-org/.Rprofile +++ b/mlr-org/.Rprofile @@ -1,2 +1 @@ -s options("install.opts" = "--without-keep.source") From 0d7e894e70fed266bf81ec34f73c78788a0d053d Mon Sep 17 00:00:00 2001 From: Sebastian Fischer Date: Fri, 20 Oct 2023 11:36:22 +0200 Subject: [PATCH 3/6] fix: car package no longer available on CRAN --- mlr-org/renv.lock | 104 ---------------------------------------------- 1 file changed, 104 deletions(-) diff --git a/mlr-org/renv.lock b/mlr-org/renv.lock index 3bb99ca3..4ee5a25c 100644 --- a/mlr-org/renv.lock +++ b/mlr-org/renv.lock @@ -107,28 +107,6 @@ "testthat" ] }, - "FactoMineR": { - "Package": "FactoMineR", - "Version": "2.6", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "03f1e6e9bd17ae7866ec4a826a985007", - "Requirements": [ - "DT", - "MASS", - "car", - "cluster", - "ellipse", - "emmeans", - "flashClust", - "ggplot2", - "ggrepel", - "lattice", - "leaps", - "multcompView", - "scatterplot3d" - ] - }, "Formula": { "Package": "Formula", "Version": "1.2-4", @@ -758,25 +736,6 @@ "processx" ] }, - "car": { - "Package": "car", - "Version": "3.1-0", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "afd3f5c7d144f00d05db8e7701af7829", - "Requirements": [ - "MASS", - "abind", - "carData", - "lme4", - "maptools", - "mgcv", - "nlme", - "nnet", - "pbkrtest", - "quantreg" - ] - }, "carData": { "Package": "carData", "Version": "3.0-5", @@ -1298,24 +1257,6 @@ "Hash": "6b6c0f8467cd4ce0b500cabbc1bd1763", "Requirements": [] }, - "factoextra": { - "Package": "factoextra", - "Version": "1.0.7", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "e95f1aed34b3f0a15a0c308175ee4c80", - "Requirements": [ - "FactoMineR", - "abind", - "cluster", - "dendextend", - "ggplot2", - "ggpubr", - "ggrepel", - "reshape2", - "tidyr" - ] - }, "fansi": { "Package": "fansi", "Version": "1.0.3", @@ -1623,31 +1564,6 @@ "withr" ] }, - "ggpubr": { - "Package": "ggpubr", - "Version": "0.4.0", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "77089557d374c69db7cb77e65f0d6ab0", - "Requirements": [ - "cowplot", - "dplyr", - "ggplot2", - "ggrepel", - "ggsci", - "ggsignif", - "glue", - "gridExtra", - "magrittr", - "polynom", - "purrr", - "rlang", - "rstatix", - "scales", - "tibble", - "tidyr" - ] - }, "ggrepel": { "Package": "ggrepel", "Version": "0.9.1", @@ -3961,26 +3877,6 @@ "yaml" ] }, - "rstatix": { - "Package": "rstatix", - "Version": "0.7.0", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "aa020f8efde649badd0b2b5456e942fe", - "Requirements": [ - "broom", - "car", - "corrplot", - "dplyr", - "generics", - "magrittr", - "purrr", - "rlang", - "tibble", - "tidyr", - "tidyselect" - ] - }, "rstudioapi": { "Package": "rstudioapi", "Version": "0.14", From f409f1e15d64a06d6b41df05404e2c1cfff6668e Mon Sep 17 00:00:00 2001 From: Sebastian Fischer Date: Fri, 20 Oct 2023 11:42:25 +0200 Subject: [PATCH 4/6] remove maptools --- mlr-org/renv.lock | 12 ------------ 1 file changed, 12 deletions(-) diff --git a/mlr-org/renv.lock b/mlr-org/renv.lock index 4ee5a25c..5a04ee91 100644 --- a/mlr-org/renv.lock +++ b/mlr-org/renv.lock @@ -2236,18 +2236,6 @@ "Hash": "7ce2733a9826b3aeb1775d56fd305472", "Requirements": [] }, - "maptools": { - "Package": "maptools", - "Version": "1.1-4", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "e60a1728ad29c48a3491777e0c55a07d", - "Requirements": [ - "foreign", - "lattice", - "sp" - ] - }, "markdown": { "Package": "markdown", "Version": "1.1", From 2f4d3c7433fdfc782111adeb8421381758bf0433 Mon Sep 17 00:00:00 2001 From: Sebastian Fischer Date: Fri, 20 Oct 2023 11:49:29 +0200 Subject: [PATCH 5/6] remove .Rprofile --- mlr-org/.Rprofile | 1 - 1 file changed, 1 deletion(-) delete mode 100644 mlr-org/.Rprofile diff --git a/mlr-org/.Rprofile b/mlr-org/.Rprofile deleted file mode 100644 index 42a28ce9..00000000 --- a/mlr-org/.Rprofile +++ /dev/null @@ -1 +0,0 @@ -options("install.opts" = "--without-keep.source") From 1a2b4df853e33318a34e3129c28d449d14f36efc Mon Sep 17 00:00:00 2001 From: Sebastian Fischer Date: Fri, 20 Oct 2023 11:58:03 +0200 Subject: [PATCH 6/6] update .Rprofile --- .gitignore | 1 - mlr-org/.Rprofile | 3 +++ 2 files changed, 3 insertions(+), 1 deletion(-) create mode 100644 mlr-org/.Rprofile diff --git a/.gitignore b/.gitignore index 57255442..8f1876cc 100644 --- a/.gitignore +++ b/.gitignore @@ -155,7 +155,6 @@ $RECYCLE.BIN/ # Custom rules (everything added below won't be overriden by 'Generate .gitignore File' if you use 'Update' option) # R -.Rprofile README.html src/*.o src/*.so diff --git a/mlr-org/.Rprofile b/mlr-org/.Rprofile new file mode 100644 index 00000000..42360db6 --- /dev/null +++ b/mlr-org/.Rprofile @@ -0,0 +1,3 @@ +source("renv/activate.R") +options(repos = list(CRAN="http://cran.rstudio.com/")) +options(install.opts = "--without-keep.source")