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sample sheet check reports wrong row item #65

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antunderwood opened this issue Sep 9, 2021 · 1 comment
Open

sample sheet check reports wrong row item #65

antunderwood opened this issue Sep 9, 2021 · 1 comment
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@antunderwood
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In the checks for long reads and fast5 files the wrong file is reported if there is an error

exit 1, "ERROR: Please check input samplesheet -> Long FastQ file does not exist!\n${row.R1}"

Should read

 exit 1, "ERROR: Please check input samplesheet -> Long FastQ file does not exist!\n${row.LongFastQ}"

exit 1, "ERROR: Please check input samplesheet -> Fast5 file does not exist!\n${row.R1}"

Should read

exit 1, "ERROR: Please check input samplesheet -> Fast5 file does not exist!\n${row.Fast5}"
@antunderwood antunderwood added the bug Something isn't working label Sep 9, 2021
@d4straub
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True, thanks for the report, will be fixed in a new version!

@d4straub d4straub added this to the 2.1.0 milestone Sep 13, 2021
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