dicominfo not reporting all information

[araikes]

Summary

I'm attempting to convert some data from a Siemens Vida running XA20 and producing enhanced DICOMs. I followed the example here for generating the dicominfo.tsv file prior to setting up my heuristic file. I removed all of the derived images (e.g., the TRACEW files) since these cause it to fail with the error in #670. This allows it to run just fine but I get unusual output (see below). Is there a reason that it's not reporting correct dim4/TR/TE fields? Specific to dim4 the DTI SMS and rs-fMRI acquisitions, for example, should be 137 and 942 respectively.

Log:

singularity run /groups/adamraikes/singularity_images/heudiconv_0.13.1.sif -d $PWD/dicoms/{subject}/*/* -c none -b --minmeta -o nifti -s 000052 -f convertall
INFO: Running heudiconv version 0.13.1 latest 0.13.1
INFO: Need to process 1 study sessions
INFO: PROCESSING STARTS: {'subject': '000052', 'outdir': '/xdisk/adamraikes/test/nifti/', 'session': None}
INFO: Processing 1156 dicoms
INFO: Analyzing 1156 dicoms
INFO: Generated sequence info for 12 studies with 1156 entries total
INFO: Populating template files under /xdisk/adamraikes/test/nifti/
INFO: PROCESSING DONE: {'subject': '000052', 'outdir': '/xdisk/adamraikes/test/nifti/', 'session': None}

Heuristic: `

Platform details:

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• Local environment

• [ x] Container

Singularity: heudiconv:0.13.1

• Heudiconv version:

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total_files_till_now	example_dcm_file	series_id	dcm_dir_name	series_files	unspecified	dim1	dim2	dim3	dim4	TR	TE	protocol_name	is_motion_corrected	is_derived	patient_id	study_description	referring_physician_name	series_description	sequence_name	image_type
1	23062616_53360000_52371909	1-	fe07ab9d	1		512	512	11	1	-1	-1		FALSE	FALSE				localizer		('ORIGINAL', 'PRIMARY', 'M', 'NONE')
2	23062616_53360000_52371920	2-	a868ce34	1		256	240	160	1	-1	-1		FALSE	FALSE				Sagittal 3D T1	('ORIGINAL', 'PRIMARY', 'M', 'NONE')
3	23062616_53360000_52371931	3-	6b209f37	1		256	240	160	1	-1	-1		FALSE	FALSE				Sag 3D FLAIR	('ORIGINAL', 'PRIMARY', 'M', 'NONE')
4	23062616_53360000_52371942	4-	0ae812ca	1		448	448	33	1	-1	-1		FALSE	FALSE				OBL COR HIPPOCAMPUS T2	('ORIGINAL', 'PRIMARY', 'M', 'NONE')
141	23062616_53360000_52371953	5-	666e4ef2	137		116	116	72	1	-1	-1		FALSE	FALSE				DTI SMS		('ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE')
148	23062616_53360000_52373504	9-	8da03538	7		116	116	72	1	-1	-1		FALSE	FALSE				DTI SMS_PA	('ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE')
162	23062616_53360000_52373647	17-	2ad12395	14		128	128	32	1	-1	-1		FALSE	FALSE				Axial 3D Arterial Spin Labeling	('ORIGINAL', 'PRIMARY', 'ASL', 'NONE')
163	23062616_53360000_52373812	20-	215fc33d	1		78	78	54	1	-1	-1		FALSE	FALSE				gre_field_mapping_3 x 3 x 3 164	('ORIGINAL', 'PRIMARY', 'P', 'NONE')
164	23062616_53360000_52373823	21-	52639778	1		320	320	39	1	-1	-1		FALSE	FALSE				Axial 2D t2 start	('ORIGINAL', 'PRIMARY', 'M', 'NONE')
165	23062616_53360000_52373834	22-	7aefc563	1		320	288	39	1	-1	-1		FALSE	FALSE				AX T2 FS		('ORIGINAL', 'PRIMARY', 'M', 'NONE')
1141	23062616_53360000_52373845	23-	bdafc35b	976		88	88	64	1	-1	-1		FALSE	FALSE				rs-fMRI		('ORIGINAL', 'PRIMARY', 'FMRI', 'NONE')
1156	23062616_53360002_52384581	25-	647dd794	15		88	88	64	1	-1	-1		FALSE	FALSE				rs-fMRI PA phase	('ORIGINAL', 'PRIMARY', 'FMRI', 'NONE')

[lakilpatrick]

I am having the same issue with version 1.0.1