v2022-11-25

What's Changed

• Edited telocyte by @bvarner-ebi in #1721
• Fixed typos for pituitary and basophilic by @bvarner-ebi in #1723
• Added gogoeditdiff trigger by @shawntanzk in #1735
• Fixed contributor QC by @anitacaron in #1734
• Added new terms 'blood lymphocyte' and 'peripheral blood lymphocyte' by @bvarner-ebi in #1725
• Fixed typo in text definition of CL:4030030 'peripheral blood lymphocyte' by @bvarner-ebi in #1746
• Released CL 25 November by @bvarner-ebi in #1751

Full Changelog: v2022-10-28...v2022-11-25

v2022-10-28

What's Changed

• Added CL website link by @shawntanzk in #1705
• Added docs for taxon constraints by @shawntanzk in #1708
• Added BEST4 intestinal epithelial cell by @bvarner-ebi in #1696
• Added lymphoblast and B-lymphoblast by @lubianat in #1679
• Updated cellPartOfAnatomicalEntity.yaml by @dosumis in #1277
• Added amacrine cell types by @bvarner-ebi in #1715
• Changed actions to use checkoutv3 by @shawntanzk in #1716
• Imported kidney Uberon terms to CL to support new HubMAP CL terms by @bvarner-ebi in #1717
• Added hillock cells of urethra and prostate by @lubianat in #1711
• CL 28 October release by @bvarner-ebi in #1720

Full Changelog: v2022-09-15...v2022-10-28

v2022-09-15

What's Changed

• Added club cell of urethral epithelium by @ar-ibrahim in #1661
• Added rln GABAergic cortical interneuron #1649 by @ar-ibrahim in #1681
• Addressed #19 Claudius_cell_synonyms by @bvarner-ebi in #1685
• Added koniocellular cell by @shawntanzk in #1686
• Added #1688 NTR kidney collecting duct intercalated cell type B by @bvarner-ebi in #1689
• Addressed #1690 synonyms encased in apostrophes by @bvarner-ebi in #1691
• Addressed #1680 macrophage synonyms by @bvarner-ebi in #1697
• Removed "not" in CL by @shawntanzk in #1694
• Fixed IRI to be in correct range for 'kidney collecting duct beta-intercalated cell' by @bvarner-ebi in #1700
• Addressed #1698 edit synonym for leukocyte by @bvarner-ebi in #1702
• CL 15 September release by @bvarner-ebi in #1703

New Contributors

• @ar-ibrahim made their first contribution in #1661

Full Changelog: v2022-08-16...v2022-09-15

v2022-08-16

What's Changed

• Added cite and application to readme by @shawntanzk in #1595
• Add human_reference_atlas subset by @anitacaron in #1497
• Standardising ORCID and contributor annotation property by @anitacaron in #1640
• Added some cochlear nucleus neuron types by @shawntanzk in #1634
• Addresses #1627 Update a_adding_term_cellxgene.md by @bvarner-ebi in #1633
• Addresses #1582-NTR-epithelial_cells_DCT by @bvarner-ebi in #1644
• Add QC for dcterms:contributor by @anitacaron in #1646
• Addresses #1171 NTR hillock cell by @bvarner-ebi in #1624
• Addresses #1583-NTR-connecting_tubule_principal_cell by @bvarner-ebi in #1647
• Add gamete-nursing cell and subclasses. by @gouttegd in #1626
• Addresses #1584 NTR connecting tubule intercalated cell types by @bvarner-ebi in #1648
• Adresses #1585 NTR renal medullary fibroblast by @bvarner-ebi in #1650
• Add telocyte (CL:0017004) by @lubianat in #1198
• Clean up old import files. by @gouttegd in #1653
• Addresses #1651 NTR thymus cells by @bvarner-ebi in #1652
• Remove some fluff from cl.Makefile by @matentzn in #1385
• Add Arwa Id range by @shawntanzk in #1660
• Add sparql check for annotations by @anitacaron in #1659
• Addresses #1658 'gall bladder' should be 'gallbladder' by @bvarner-ebi in #1667
• Add taxon restriction to epidermal cell (sensu Arthropoda). by @gouttegd in #1668
• Add synonym to 'migratory cardiac neural crest cell' by @nicolevasilevsky in #1669
• Create obsolete classes related to alt_id by @anitacaron in #1662
• Added somatosensory neuron & trigeminal neuron by @shawntanzk in #1671
• Revise label for CL_0000047 (neural stem cell) by @nicolevasilevsky in #1673
• Replace string "Homo sapiens" with obo:NCBITaxon_9606 by @anitacaron in #1675
• Add CL_0017003 (epithelial cell of prostatic urethra) by @lubianat in #1172
• Add hypendymal cell by @shawntanzk in #1676
• Add CL_0017002 (prostate neuroendocrine cell) by @lubianat in #1170
• Remove duplicate bronchioalveolar stem cell by @shawntanzk in #1677
• CL 16 August release by @bvarner-ebi in #1678

Full Changelog: v2022-06-18...v2022-08-16

v2022-06-18 release

What's Changed

• Addresses #1604 hepatic progenitor cell by @bvarner-ebi in #1625
• Addresses #1627 cellxgene NTR template by @bvarner-ebi in #1632
• Change part of to adjacent to for lymph node marginal reticular cell by @shawntanzk in #1637
• Update relations_guide.md by @dosumis in #1638
• Fix relation for CL_0009103 by @shawntanzk in #1639
• Removed editors note on lymph node marginal reticular cell by @shawntanzk in #1642

Full Changelog: v2022-06-15...v2022-06-18

2022-06-15 release

What's Changed

• Add anatomical location to spongiotrophoblast cell by @paolaroncaglia in #1453
• Edit 'adult endothelial progenitor cell' and add children by @paolaroncaglia in #1454
• Add Leydig stem cell; edit Leydig cell; correct 2 "derives from" into… by @paolaroncaglia in #1456
• Edit CL_0000645 pituicyte by @paolaroncaglia in #1457
• Closes #1439 NTR Thymic nurse cell by @bvarner-ebi in #1455
• Remove incorrect axiom and superclasses from CL_0002459 "langerin-neg… by @paolaroncaglia in #1458
• Improve location axiom of CL_0009013 "fetal hepatobiliary progenitor … by @paolaroncaglia in #1459
• Edit def of CL_0002619 (adult endothelial progenitor cell) to broaden… by @paolaroncaglia in #1462
• Add CL_0009096 (esophagus non-keratinized squamous epithelial cell) by @paolaroncaglia in #1464
• Add CL_0009097 (embryonic skeletal muscle fiber) and CL_0009098 (feta… by @paolaroncaglia in #1465
• Add CL_0009099 (fibro/adipogenic progenitor cell) by @paolaroncaglia in #1467
• Edit CL_0009003 (larval midgut cell) by @paolaroncaglia in #1468
• imported UBERON:0007221 by @shawntanzk in #1469
• Fixes #1399 edits to glomerular visceral epithelial cell (fresh branc… by @bvarner-ebi in #1470
• Fixes #1460 update glomerular visceral epithelial cell label to podocyte by @bvarner-ebi in #1474
• Update to ODK 1.3.0 by @shawntanzk in #1477
• Closes #1475 NTR fallopian tube secretory epithelial cell by @bvarner-ebi in #1480
• Add synonyms to enterocyte terms by @paolaroncaglia in #1484
• remove SIO_000658 by @shawntanzk in #1485
• Update resolving_merge_conflicts.md by @bvarner-ebi in #1483
• Fixes #1489 [Typo/Bug] Typo in synonym of CL:0002169 by @bvarner-ebi in #1493
• Update h_typos_bugs.md by @paolaroncaglia in #1494
• Closes #1486 [NTR] Fallopian tube ciliated cell by @bvarner-ebi in #1487
• Removing auto assignments from issue templates by @bvarner-ebi in #1495
• Addresses #81 Add syns and xrefs for subtypes of glomerular visceral ep… by @bvarner-ebi in #1496
• Add equivalence axiom to CL_0009098 by @paolaroncaglia in #1498
• Add CL_0009100 (hepatic portal fibroblast) by @paolaroncaglia in #1500
• Add CL specific docs for merging terms by @shawntanzk in #1448
• Added Kisspeptin neurons and subclasses by @shawntanzk in #1424
• Add comment to broad grouping terms by @paolaroncaglia in #1502
• Add comment to last set of anatomogram terms by @paolaroncaglia in #1505
• Broaden 'reticular cell' and add 2 descendants by @paolaroncaglia in #1509
• Add CL_0009103 (lymph node marginal reticular cell) by @paolaroncaglia in #1512
• Changed cortical interneuron to use cerebral cortex by @shawntanzk in #1510
• Add B and T cell zone reticular cell terms by @paolaroncaglia in #1514
• import uberon:8410053 by @shawntanzk in #1515
• Add CL_0009106 (medullary reticular cell) by @paolaroncaglia in #1516
• Add part_of to CL_0009104 B cell zone reticular cell by @paolaroncaglia in #1517
• Add CL_0009107 and CL_0009108 by @paolaroncaglia in #1518
• Remove capable_of axioms in oxtrINs by @shawntanzk in #1511
• Add lymphatic endothelial cell of trabecula/medulla ceiling by @paolaroncaglia in #1519
• Add centrocyte and centroblast by @paolaroncaglia in #1520
• Add CL_0009113 (T follicular regulatory cell) by @paolaroncaglia in #1521
• Add CL_0009114 (monocytoid B Cell) by @paolaroncaglia in #1522
• Fixes #1524 corneal epithelial cell should be part_of the corneal epi… by @bvarner-ebi in #1525
• Fixes #1441 Create synonym_type_property 'abbreviation' for CL by @bvarner-ebi in #1527
• Adding contact information as per #1504 by @lubianat in #1526
• Add obsolete replaced_by check by @anitacaron in #1530
• Review liver stem cells by @paolaroncaglia in #1533
• Reference GitHub discussion by @paolaroncaglia in #1534
• Add Ellen's ORCID to lymph node cell types by @paolaroncaglia in #1535
• Merge CL:0000111 to CL:2000032 by @shawntanzk in #1538
• Added information to cardiac neuron by @shawntanzk in #1501
• Shortening labels for BDS terms by @shawntanzk in #1539
• Import terms for #1523 by @shawntanzk in #1542
• Change actions diff to use simple by @shawntanzk in #1543
• Edit anatomical locations of 3 lymph node cell types by @paolaroncaglia in #1547
• Fixes issues suggested in #1306 by @shawntanzk in #1461
• Remove unmerge component by @shawntanzk in #1529
• Change has characteristic to has part for terminals by @shawntanzk in #1553
• Addresses #1545 Incomplete classification under animal cell #1545 by @bvarner-ebi in #1546
• Fixes #1548 corneal epithelial cell edits by @bvarner-ebi in #1554
• Addresses #1528 renal interstitial pericyte and glomerular mesangial cell edits by @bvarner-ebi in #1551
• Disambiguate follicle cells by @gouttegd in #1550
• Fixes #1503 Strip 'cell' from labels of 'pericyte cell' and 'perirenal adipocyte cell' by @bvarner-ebi in #1555
• Edit CL_0009106 (medullary reticular cell) by @paolaroncaglia in #1563
• Change part_of to has_soma_location for neuronss by @shawntanzk in #1541
• Fix typo in PMID by @cthoyt in #1556
• Update relations_guide.md by @dosumis in #1478
• Create LICENSE by @cthoyt in #1549
• Fix typo in CL_0009114 (monocytoid B Cell) by @paolaroncaglia in #1564
• Edit CL_0000015 (male germ cell) by @paolaroncaglia in #1565
• Edit oligodendrocyte precursor cell by @paolaroncaglia in #1566
• Delete doc directory by @paolaroncaglia in #1567
• Replaced high/low plasma membrane amount with RO terms by @shawntanzk in #1560
• Update cite.md by @paolaroncaglia in #1568
• Update history.md by @paolaroncaglia in #1569
• Edit def of CL_0008016 "activated skeletal muscle satellite cell' by @paolaroncaglia in #1570
• Fix wrong glial cell axioms by @shawntanzk in #1572
• Update ODK 131 by @matentzn in #1573
• added neocortex location to 3 basket cell types by @shawntanzk in #1574
• add myelinating glial cell by @shawntanzk in https://github.com/obophenotype/cell-ontology/...

2022-02-16 Release

What's Changed

• Fixed Minor typo in def of CL:0000190 'fast muscle cell' by @JArgasinska in #1398
• Change Long Range SST to be subclassOf SST Chodl by @shawntanzk in #1397
• Adding import documentation by @bvarner-ebi in #1405
• Fix for Issue #1390 - [Typo/Bug] Duplicated exact synonym in CL:0002430 and CL:0002431 by @bvarner-ebi in #1394
• update multipolar neuron def by @shawntanzk in #1407
• Update cl-idranges.owl by @dosumis in #1422
• Closes #1409 - NTR choroidal melancoyte by @bvarner-ebi in #1425
• Fixes #1417 Add synonyms to light melanocyte by @bvarner-ebi in #1426
• Closes #1418 Add synonyms to dark melanocyte by @bvarner-ebi in #1430
• add logical def and change syn scope for 'endothelial cell of high en… by @nicolevasilevsky in #1433
• Closes #1420 add synonyms to "mammary alveolar cell" by @bvarner-ebi in #1436
• Closes #1419 add synonym to 'epithelial fate stem cell' by @bvarner-ebi in #1437
• Closes #1435 [NTR] TEMRA: terminally differentiated effector memory c… by @bvarner-ebi in #1440
• Closes #1411-[NTR]-fibroblast-like_synoviocyte by @bvarner-ebi in #1427
• Added retinoblast by @shawntanzk in #1429
• Added OxtrINs by @shawntanzk in #1408
• Closes #1438 NTR-oligodendrocyte_type_2_astrocyte_progenitor_cell by @bvarner-ebi in #1442
• Axiomatize PATO histological quality by @shawntanzk in #1444
• Closes #1400 - edits to renal intercalated cell types by @bvarner-ebi in #1432
• Add alt ID and Synonym for cerebral cortex neuron by @shawntanzk in #1446
• Automated diff machine by @shawntanzk in #1445
• added --labels True to ROBOT diff by @shawntanzk in #1447
• Added back EC axioms to CL_0000151 by @shawntanzk in #1450
• Revert GO mirror by @shawntanzk in #1388

New Contributors

• @JArgasinska made their first contribution in #1398

Full Changelog: v2022-01-05...v2022-02-16

2022-01-05 Release

Release Notes:

Edits:

• fixed spelling and grammatical errors
• change CL:0000815 name to tear secreting cell
• fixed various neuronal cells axioms
• added various synonyms
• changed CP terms to CL identifiers
• obsoleted CL:4023034, CL:4023067, CL:4023078 (to be moved to PCL)

New Terms:

• L6 tyrosine hydroxylase positive sst expressing GABAergic cortical interneuron (Mus musculus)
• sst chodl GABAergic cortical interneuron

2021-12-16 release

Infrastructure:

• Simple and Base file fixed

Edits:

• Change 'supportive' & 'support' to 'supporting' in labels for various cells
• Edit label of mesenchymal stem cell of adipose tissue
• Merged fusimotor neuron to CL:0008037
• Merged neuron of cerebral cortex to CL:0010012
• Fixed some minor errors with xref formats

New Terms:

• endothelial cell of placenta
• smooth muscle cell of placenta
• endothelial cell of hepatic portal vein
• endothelial cell of uterus
• alveolar type 1 fibroblast cell
• alveolar type 2 fibroblast cell

2021-12-07 Release

New Terms:
epithelial cell of endometrial gland
endothelial cell of respiratory system lymphatic vessel
fused extravillous trophoblast
lung pericyte
dermal microvascular endothelial cell
pulmonary capillary endothelial cell
alveolar capillary type 1 endothelial cell
alveolar capillary type 2 endothelial cell

Edits:
some fixes in removing/adding various is_a axioms
edited def of amacrine cell
various spelling fixes
various synonym additions & edits
change derives_from to RO:0001000
fixed various capitalization inconsistencies