From 6023dc2a2a0aac3018b7b3317a190813fccf28dc Mon Sep 17 00:00:00 2001 From: aleixpuig <94959119+aleixpuigb@users.noreply.github.com> Date: Tue, 24 Oct 2023 14:33:15 +0100 Subject: [PATCH 1/3] Addresses #3096 NTR pulmonary venule Addresses #3096 NTR pulmonary venule --- src/ontology/uberon-edit.obo | 25 ++++++++++++++++++------- 1 file changed, 18 insertions(+), 7 deletions(-) diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index 9b6a1ff8a4..31b2e00fa0 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -73166,8 +73166,8 @@ id: UBERON:0003532 name: hindlimb skin def: "A zone of skin that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] synonym: "hind limb skin" EXACT [OBOL:automatic] -synonym: "lower limb skin" EXACT [https://orcid.org/0000-0002-0819-0473] synonym: "lower limb skin" EXACT [FMA:23102] +synonym: "lower limb skin" EXACT [https://orcid.org/0000-0002-0819-0473] synonym: "skin of hind limb" EXACT [OBOL:automatic] synonym: "skin of hindlimb" EXACT [OBOL:automatic] synonym: "skin of lower extremity" EXACT [OBOL:automatic] @@ -187882,10 +187882,10 @@ relationship: present_in_taxon NCBITaxon:8292 ! Amphibia [Term] id: UBERON:0036243 name: vaginal fluid -xref: BTO:0003084 {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0003-4423-4370"} def: "Fluid that lines the vaginal walls that consists of multiple secretions that collect in the vagina from different glands." [http://www.bumc.bu.edu/sexualmedicine/physicianinformation/female-genital-anatomy/] synonym: "vaginal discharge" RELATED [] synonym: "vaginal secretion" RELATED [] +xref: BTO:0003084 {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0003-4423-4370"} intersection_of: UBERON:0006314 ! bodily fluid intersection_of: located_in UBERON:0000996 ! vagina @@ -212064,8 +212064,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010489 name: muscular artery -xref: BTO:0004724 {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0003-4423-4370"} def: "Part of the external carotid which delivers blood to the mm rectus cervicis and interhyoideus posterior." [AAO:BJB] +xref: BTO:0004724 {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0003-4423-4370"} is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0001070 ! external carotid artery relationship: supplies UBERON:3010654 ! rectus cervicis @@ -212390,8 +212390,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010586 name: vasa efferentia -xref: BTO:0002254 {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0003-4423-4370"} def: "Sperm travel through these 4 or 5 fine ducts which pass through the mesorchium from the testis to the sexual kidney." [AAO:BMZ] +xref: BTO:0002254 {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0003-4423-4370"} is_a: UBERON:0006946 ! efferent duct property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -217149,8 +217149,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Da [Term] id: UBERON:4300194 name: photophore -xref: BTO:0001477 {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0003-4423-4370"} def: "A light-emitting organ which appears as luminous spots on various marine animals, including fish and cephalopods." [PHENOSCAPE] {comment="https://en.wikipedia.org/wiki/Photophore"} +xref: BTO:0001477 {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0003-4423-4370"} is_a: UBERON:0000062 ! organ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: never_in_taxon NCBITaxon:314146 ! Euarchontoglires @@ -223582,8 +223582,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/476" xsd: [Term] id: UBERON:8450002 name: excretory system -xref: BTO:0006338 {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0003-4423-4370"} def: "An anatomical system that eliminates waste products that arise as a result of metabolic activity." [GO:0007588] +xref: BTO:0006338 {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0003-4423-4370"} intersection_of: UBERON:0000467 ! anatomical system intersection_of: capable_of GO:0046903 ! secretion created_by: http://orcid.org/0000-0002-6095-8718 @@ -223984,8 +223984,8 @@ property_value: dcterms-date "2022-11-22T09:15:50Z" xsd:dateTime [Term] id: UBERON:8480040 name: ovarian fluid -xref: BTO:0004569 {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0003-4423-4370"} def: "Fish ovary secretion released with eggs." [PMID:8526977] +xref: BTO:0004569 {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0003-4423-4370"} is_a: UBERON:0006537 ! female reproductive gland secretion relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli relationship: in_taxon NCBITaxon:7898 ! Actinopterygii @@ -224613,6 +224613,17 @@ relationship: overlaps UBERON:0018227 ! pulmonary lymphatic vessel relationship: surrounds UBERON:0010369 ! secondary pulmonary lobule property_value: dcterms-date "2023-10-23T08:52:12Z" xsd:dateTime +[Term] +id: UBERON:8600024 +name: pulmonary venule +def: "A venule that is part of a lung and drains oxygenated blood from pulmonary capillaries. A pulmonary venule merges into a pulmonary vein branch that run in the pulmonary interlobular septa." [PMID:22283705, PMID:30247823] +intersection_of: UBERON:0001979 ! venule +intersection_of: part_of UBERON:0002048 ! lung +relationship: connected_to UBERON:0002016 ! pulmonary vein +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: drains UBERON:0016405 ! pulmonary capillary +property_value: dcterms-date "2023-10-24T11:26:27Z" xsd:dateTime + [Typedef] id: aboral_to name: aboral to From 6c222efcdffb263e0c547c12f0b742069b3720ee Mon Sep 17 00:00:00 2001 From: aleixpuig <94959119+aleixpuigb@users.noreply.github.com> Date: Tue, 14 Nov 2023 11:18:35 +0000 Subject: [PATCH 2/3] edit typo --- src/ontology/uberon-edit.obo | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index 31b2e00fa0..0923094cfb 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -73166,8 +73166,8 @@ id: UBERON:0003532 name: hindlimb skin def: "A zone of skin that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] synonym: "hind limb skin" EXACT [OBOL:automatic] -synonym: "lower limb skin" EXACT [FMA:23102] synonym: "lower limb skin" EXACT [https://orcid.org/0000-0002-0819-0473] +synonym: "lower limb skin" EXACT [FMA:23102] synonym: "skin of hind limb" EXACT [OBOL:automatic] synonym: "skin of hindlimb" EXACT [OBOL:automatic] synonym: "skin of lower extremity" EXACT [OBOL:automatic] @@ -224616,7 +224616,7 @@ property_value: dcterms-date "2023-10-23T08:52:12Z" xsd:dateTime [Term] id: UBERON:8600024 name: pulmonary venule -def: "A venule that is part of a lung and drains oxygenated blood from pulmonary capillaries. A pulmonary venule merges into a pulmonary vein branch that run in the pulmonary interlobular septa." [PMID:22283705, PMID:30247823] +def: "A venule that is part of a lung and drains oxygenated blood from pulmonary capillaries. A pulmonary venule merges into a pulmonary vein branch that runs in the pulmonary interlobular septa." [PMID:22283705, PMID:30247823] intersection_of: UBERON:0001979 ! venule intersection_of: part_of UBERON:0002048 ! lung relationship: connected_to UBERON:0002016 ! pulmonary vein From 8b9d3a07d1f6e21e02a643aa5e1b73fb64c7743f Mon Sep 17 00:00:00 2001 From: aleixpuig <94959119+aleixpuigb@users.noreply.github.com> Date: Tue, 14 Nov 2023 11:58:00 +0000 Subject: [PATCH 3/3] Add part of pulmonary venous system --- src/ontology/uberon-edit.obo | 1 + 1 file changed, 1 insertion(+) diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index bc18438c15..02dd4ba89d 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -224620,6 +224620,7 @@ intersection_of: part_of UBERON:0002048 ! lung relationship: connected_to UBERON:0002016 ! pulmonary vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: drains UBERON:0016405 ! pulmonary capillary +relationship: part_of UBERON:0013127 ! pulmonary venous system property_value: dcterms-date "2023-10-24T11:26:27Z" xsd:dateTime [Typedef]