Repositories list

• OTTR_Template

  Public template
  OTTR for making courses! This is a template repo that helps people write 1 course but publish it in three places

  open-sourceeducationonline-learning+ 1edtech-software

  CSS

  •

  Creative Commons Attribution 4.0 International

  •14•17•69•2•Updated Nov 14, 2024Nov 14, 2024

• Baltimore_nonprofits_assets

  Public
  Analysis to accompany article by Tyler Derreth et al. "Serving a Segregated City: An Analysis of Nonprofit Locations in Baltimore "

  HTML

  •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

• AnVIL_CoFests_2024

  Public
  Information about AnVIL Community Conference CoFest Sessions - November 2024

  workshopsconferenceanvil

  CSS

  •

  Creative Commons Attribution 4.0 International

  •1•0•5•1•Updated Nov 12, 2024Nov 12, 2024

• ottrproject.org

  Public
  This repo publishes ottrproject.org

  R

  •

  MIT License

  •1•0•4•3•Updated Nov 8, 2024Nov 8, 2024

• OTTR_Template_Website

  Public template
  Template to create websites with checks for broken urls and spelling, as well as automated rendering.

  edtech-software

  CSS

  •

  MIT License

  •3•2•7•1•Updated Nov 7, 2024Nov 7, 2024

• OTTR_Quizzes

  Public template
  A template for companion repo for OTTR courses that require quizzes to be kept private

  edtech-software

  R

  •0•0•3•2•Updated Nov 7, 2024Nov 7, 2024

• jhudsl.github.io

  Public
  source code for the JHU Data Science Lab website

  website

  HTML

  •9•4•1•0•Updated Nov 6, 2024Nov 6, 2024

• template-test

  Public
  CSS

  •

  Creative Commons Attribution 4.0 International

  •0•0•4•0•Updated Nov 1, 2024Nov 1, 2024

• AnVIL_Book_Champions

  Public
  One-stop resource for AnVIL Champions

  guideanvil

  CSS

  •

  Creative Commons Attribution 4.0 International

  •0•0•1•1•Updated Oct 31, 2024Oct 31, 2024

• ottr-reports

  Public
  For report checks for OTTR Github Actions.

  edtech-software

  R

  •1•0•1•1•Updated Oct 30, 2024Oct 30, 2024

• AnVIL_Book_Getting_Started

  Public
  A guide for getting started using AnVIL

  coursegenomicsguide+ 2cloud-computinganvil

  CSS

  •

  Creative Commons Attribution 4.0 International

  •4•1•8•2•Updated Oct 28, 2024Oct 28, 2024

• ottr-docker

  Public
  Manages dockerfiles and related images available for use with OTTR

  edtech-software

  Dockerfile

  •0•0•5•1•Updated Oct 23, 2024Oct 23, 2024

• ottrpal

  Public
  Tools for converting OTTR courses into Leanpub or Coursera courses 🦦

  edtech-software

  R

  •

  GNU General Public License v3.0

  •1•3•34•1•Updated Oct 10, 2024Oct 10, 2024

• Reproducibility_in_Cancer_Informatics

  Public
  This course discusses reproducibility and replicability in the context of cancer informatics.

  data-sciencerinformatics+ 2reproducibilitypython

  HTML

  •

  MIT License

  •0•2•7•2•Updated Oct 10, 2024Oct 10, 2024

• Documentation_and_Usability

  Public
  A course to cover the basics of creating documentation and tutorials to maximize the usability of informatics tools

  documentationsoftware-development

  CSS

  •

  MIT License

  •0•1•7•0•Updated Oct 1, 2024Oct 1, 2024

• Computing_for_Cancer_Informatics

  Public
  The course covers the key underlying principles and concepts in computing. It covers concrete discussions of the differences between cloud and local computing. The course highlights a number of computing options and etiquette for using shared resources.

  informaticscomputing

  TeX

  •

  Creative Commons Attribution 4.0 International

  •2•2•5•3•Updated Oct 1, 2024Oct 1, 2024

• AnVIL_Template

  Public template
  An OTTR spinoff template for creating AnVIL content

  templateanviledtech-software

  CSS

  •

  Creative Commons Attribution 4.0 International

  •1•0•11•2•Updated Sep 17, 2024Sep 17, 2024

• Cancer_Genome_Informatics

  Public
  CSS

  •

  MIT License

  •0•0•4•2•Updated Sep 17, 2024Sep 17, 2024

• Cancer_Informatics_Data_Visualization

  Public
  CSS

  •

  MIT License

  •0•1•1•2•Updated Sep 17, 2024Sep 17, 2024

• Adv_Reproducibility_in_Cancer_Informatics

  Public
  This course the second course in a two part series that discusses reproducibility in the context of cancer informatics.

  pythonversion-controlreproducibility+ 1r

  HTML

  •

  Creative Commons Attribution 4.0 International

  •0•2•8•1•Updated Sep 17, 2024Sep 17, 2024

• Machine_Learning_for_Cancer_Informatics

  Public
  CSS

  •

  MIT License

  •0•0•4•2•Updated Sep 17, 2024Sep 17, 2024

• Dissemination_and_Engagement

  Public
  CSS

  •

  MIT License

  •0•0•4•2•Updated Sep 17, 2024Sep 17, 2024

• Informatics_Research_Leadership

  Public
  Guidance on supporting multidisciplinary teams in cancer informatics.

  diversityinformaticsleadership

  HTML

  •

  Creative Commons Attribution 4.0 International

  •0•2•10•1•Updated Sep 17, 2024Sep 17, 2024

• Data_Management_for_Cancer_Research

  Public
  CSS

  •

  Creative Commons Attribution 4.0 International

  •0•0•5•1•Updated Sep 17, 2024Sep 17, 2024

• ITN_computing_resources

  Public
  HTML

  •

  MIT License

  •1•1•2•0•Updated Sep 17, 2024Sep 17, 2024

• coqui

  Public
  Coqui R Wrapper

  R

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Sep 17, 2024Sep 17, 2024

• BCDS_LWV_2023

  Public
  R

  •1•1•0•0•Updated Aug 12, 2024Aug 12, 2024

• AnVIL_Phylogenetic-Techniques

  Public
  A semester-long course on the basics of molecular phylogenetic techniques

  coursephylogeneticsanvil+ 1r-programming

  CSS

  •

  Creative Commons Attribution 4.0 International

  •0•0•5•1•Updated Aug 5, 2024Aug 5, 2024

• GDSCN_Book_Statistics_for_Genomics_scRNA-seq

  Public
  A set of lab modules for single cell RNA-seq analysis

  rna-seqcoursemodule+ 3scrna-seqanvilgdscn

  CSS

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•1•Updated Aug 5, 2024Aug 5, 2024

• AnVIL_Book_Instructor_Guide

  Public
  A guide for instructors using AnVIL for workshops, lessons, or courses.

  educationcourseguide+ 1anvil

  CSS

  •

  Creative Commons Attribution 4.0 International

  •0•0•3•1•Updated Aug 5, 2024Aug 5, 2024