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Jenkinsfile-bleeding-edge-monthly
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#!/usr/bin/env groovy
@Library('StanUtils')
import org.stan.Utils
utils = new org.stan.Utils()
def runTests(String testPath, boolean jumbo = false) {
try {
if (jumbo && !params.disableJumbo) {
sh "python3 runTests.py -j${env.PARALLEL} ${testPath} --jumbo --debug"
} else {
sh "python3 runTests.py -j${env.PARALLEL} ${testPath}"
}
}
finally { junit 'test/**/*.xml' }
}
def setupMakeLocal(String o = "3", String cc = "clang" , String cxx = "clang++" , String cFlags = "", String cppFlags = "", String cxxFlags = "", String ldFlags = "", String makeLocalPath = "make/local") {
sh """
echo O="${o}" >> ${makeLocalPath}
echo CC="${cc}" >> ${makeLocalPath}
echo CXX="${cxx}" >> ${makeLocalPath}
"""
if (cc == "clang") {
sh """
echo CFLAGS+="-stdlib=libc++ ${cFlags}" >> ${makeLocalPath}
echo CPPFLAGS+="-nostdinc++ -nodefaultlibs -I/usr/local/include/c++/v1 ${cppFlags}" >> ${makeLocalPath}
echo CXXFLAGS+="-nostdinc++ -nostdlib++ -I/usr/local/include/c++/v1 ${cxxFlags}" >> ${makeLocalPath}
echo LDFLAGS+="-L/usr/local/lib -Wl,-R/usr/local/lib -I/usr/local/include/c++/v1 -L/usr/local/lib -Wl,-rpath,/usr/local/lib -lc++ -lc++abi -lm -lc -lgcc_s -lgcc ${ldFlags}" >> ${makeLocalPath}
"""
}
sh "${cxx} --version"
}
pipeline {
agent none
options {
preserveStashes(buildCount: 7)
}
parameters {
booleanParam(defaultValue: false, name: 'buildDocker', description: 'Build docker image with latest gcc, clang')
string(defaultValue: 'develop', name: 'cmdstan_pr',
description: "CmdStan PR to test against. Will check out this PR in the downstream Stan repo. Example: PR-123")
string(defaultValue: 'develop', name: 'stan_pr',
description: "Stan PR to test against. Will check out this PR in the downstream Stan repo. Example: PR-123")
string(defaultValue: 'develop', name: 'math_pr',
description: "Math PR to test against. Will check out this PR in the downstream Math repo. Example: PR-123")
string(defaultValue: 'master', name: 'stanc3_pr',
description: "Stanc3 PR to test against. Will check out this PR in the downstream Math repo. Example: PR-123")
booleanParam(defaultValue: true, description: 'Run Full Unit Tests', name: 'run_full_unit_tests')
booleanParam(defaultValue: true, description: 'Run CmdStan & Math tests', name: 'run_cmdstan_math_tests')
string(name: 'custom_gcc_tag', description: "Example: 13.3.0 | See: https://api.github.com/repos/gcc-mirror/gcc/tags")
string(name: 'custom_llvm_tag', description: "Example: 19.1.0-rc4 | See: https://api.github.com/repos/llvm/llvm-project/tags")
}
environment {
STAN_NUM_THREADS = 4
N_TESTS = 100
PARALLEL = 4
GCC = 'g++'
}
stages {
stage('Build and push docker image') {
when {
beforeAgent true
expression {
params.buildDocker
}
}
agent {
dockerfile {
filename 'docker/builder/Dockerfile'
dir '.'
label 'linux && triqs'
args '--group-add=987 --group-add=980 --group-add=988 --entrypoint=\'\' -v /var/run/docker.sock:/var/run/docker.sock'
additionalBuildArgs '--build-arg PUID=\$(id -u) --build-arg PGID=\$(id -g)'
}
}
environment { DOCKER_TOKEN = credentials('aada4f7b-baa9-49cf-ac97-5490620fce8a') }
steps {
script {
retry(3) { checkout scm }
sh """
cd docker/bleeding-edge-compilers
docker build -t stanorg/ci:bleeding-edge-compilers --no-cache --build-arg PUID=\$(id -u) --build-arg PGID=\$(id -g) --build-arg CUSTOM_GCC_TAG=\${custom_gcc_tag} --build-arg CUSTOM_LLVM_TAG=\${custom_llvm_tag} .
docker login --username stanorg --password "${DOCKER_TOKEN}"
docker push stanorg/ci:bleeding-edge-compilers
"""
}
}
post {
always {
deleteDir()
}
}
}
stage('Pull latest docker image') {
parallel {
stage('Pull on mesa') {
agent { label 'linux && v100 && mesa' }
steps {
sh "docker pull stanorg/ci:bleeding-edge-compilers"
}
}
stage('Pull on triqs') {
agent { label 'linux && v100 && triqs' }
steps {
sh "docker pull stanorg/ci:bleeding-edge-compilers"
}
}
}
}
stage('Prepare math') {
agent {
docker {
image 'alpine/git'
label 'linux'
args "--entrypoint=\'\'"
}
}
steps {
script {
sh """
rm -rf math
git clone https://github.com/stan-dev/math.git
cd math
if [[ "${params.math_pr}" == *"PR-"* ]]; then
PRID=\$(echo "${params.math_pr}" | tr "-" "\n" | tail -1)
git fetch origin pull/\$PRID/head:ci-branch
git checkout ci-branch
else
git checkout "${params.math_pr}"
fi
git clean -xffd
"""
stash 'MathSetup'
}
}
post {
always {
deleteDir()
}
}
}
stage('Prepare Performance-Tests-Cmdstan') {
agent {
docker {
image 'alpine/git'
label 'linux'
args "--entrypoint=\'\'"
}
}
steps {
deleteDir()
checkout([$class: 'GitSCM',
branches: [[name: '*/master']],
doGenerateSubmoduleConfigurations: false,
extensions: [[$class: 'SubmoduleOption',
disableSubmodules: false,
parentCredentials: false,
recursiveSubmodules: true,
reference: '',
trackingSubmodules: false]],
submoduleCfg: [],
userRemoteConfigs: [[url: "https://github.com/stan-dev/performance-tests-cmdstan.git",
credentialsId: 'a630aebc-6861-4e69-b497-fd7f496ec46b'
]]])
stash 'PerfSetup'
}
post {
always {
deleteDir()
}
}
}
stage('Prepare stanc3') {
agent {
docker {
image 'alpine/git'
label 'linux'
args "--entrypoint=\'\'"
}
}
steps {
script {
sh """
rm -rf stanc3
git clone https://github.com/stan-dev/stanc3.git
cd stanc3
git submodule update --init --recursive
if [[ "${params.stanc3_pr}" == *"PR-"* ]]; then
PRID=\$(echo "${params.stanc3_pr}" | tr "-" "\n" | tail -1)
git fetch origin pull/\$PRID/head:ci-branch
git checkout ci-branch
else
git checkout "${params.stanc3_pr}"
fi
git clean -xffd
"""
stash 'Stanc3Setup'
}
}
post {
always {
deleteDir()
}
}
}
stage("Get nightly Stanc3") {
agent {
docker {
image 'osexp2000/ubuntu-with-utils'
args "--entrypoint=\'\'"
label 'linux'
}
}
steps {
sh"""
wget -O stanc https://github.com/stan-dev/stanc3/releases/download/nightly/linux-stanc && mkdir bin && mv stanc bin/
chmod +x bin/stanc
"""
stash name:'ubuntu-exe', includes:'bin/stanc'
}
post { always { sh "rm -rf ./*" }}
}
stage('Full Unit Tests') {
when {
beforeAgent true
expression { params.run_full_unit_tests }
}
parallel {
stage('Rev/Fwd Unit Tests - CLANG') {
agent {
docker {
image 'stanorg/ci:bleeding-edge-compilers'
label 'linux && triqs'
args '--pull always --cap-add SYS_PTRACE'
}
}
steps {
unstash 'MathSetup'
dir('math') {
script {
setupMakeLocal("3", "clang", "clang++")
runTests("test/unit/math/rev")
runTests("test/unit/math/fwd")
}
}
}
post { always { retry(3) { deleteDir() } } }
}
stage('Mix Unit Tests - CLANG') {
agent {
docker {
image 'stanorg/ci:bleeding-edge-compilers'
label 'linux && triqs'
args '--pull always --cap-add SYS_PTRACE'
}
}
steps {
unstash 'MathSetup'
dir('math') {
script {
setupMakeLocal("3", "clang", "clang++")
runTests("test/unit/math/mix", true)
}
}
}
post { always { retry(3) { deleteDir() } } }
}
stage('Prim Unit Tests - CLANG') {
agent {
docker {
image 'stanorg/ci:bleeding-edge-compilers'
label 'linux && triqs'
args '--pull always --cap-add SYS_PTRACE'
}
}
steps {
unstash 'MathSetup'
dir('math') {
script {
setupMakeLocal("3", "clang", "clang++")
runTests("test/unit/*_test.cpp", false)
runTests("test/unit/math/*_test.cpp", false)
runTests("test/unit/math/prim", true)
runTests("test/unit/math/memory", false)
}
}
}
post { always { retry(3) { deleteDir() } } }
}
stage('Rev/Fwd Unit Tests - GCC') {
agent {
docker {
image 'stanorg/ci:bleeding-edge-compilers'
label 'linux && triqs'
args '--pull always --cap-add SYS_PTRACE'
}
}
steps {
unstash 'MathSetup'
dir('math') {
script {
setupMakeLocal("3", "gcc", "g++")
runTests("test/unit/math/rev")
runTests("test/unit/math/fwd")
}
}
}
post { always { retry(3) { deleteDir() } } }
}
stage('Mix Unit Tests - GCC') {
agent {
docker {
image 'stanorg/ci:bleeding-edge-compilers'
label 'linux && triqs'
args '--pull always --cap-add SYS_PTRACE'
}
}
steps {
unstash 'MathSetup'
dir('math') {
script {
setupMakeLocal("3", "gcc", "g++")
runTests("test/unit/math/mix", true)
}
}
}
post { always { retry(3) { deleteDir() } } }
}
stage('Prim Unit Tests - GCC') {
agent {
docker {
image 'stanorg/ci:bleeding-edge-compilers'
label 'linux && triqs'
args '--pull always --cap-add SYS_PTRACE'
}
}
steps {
unstash 'MathSetup'
dir('math') {
script {
setupMakeLocal("3", "gcc", "g++")
runTests("test/unit/*_test.cpp", false)
runTests("test/unit/math/*_test.cpp", false)
runTests("test/unit/math/prim", true)
runTests("test/unit/math/memory", false)
}
}
}
post { always { retry(3) { deleteDir() } } }
}
}
}
stage("CmdStan & Math tests") {
when {
beforeAgent true
expression { params.run_cmdstan_math_tests }
}
parallel {
stage("Model end-to-end - CLANG") {
agent {
docker {
image 'stanorg/ci:bleeding-edge-compilers'
label 'linux && triqs'
args '--pull always'
}
}
steps {
dir("${env.WORKSPACE}/compile-end-to-end-O=1"){
script {
unstash "Stanc3Setup"
unstash 'ubuntu-exe'
sh """
git clone --recursive --depth 50 https://github.com/stan-dev/performance-tests-cmdstan
"""
utils.checkout_pr("cmdstan", "performance-tests-cmdstan/cmdstan", params.cmdstan_pr)
utils.checkout_pr("stan", "performance-tests-cmdstan/cmdstan/stan", params.stan_pr)
utils.checkout_pr("math", "performance-tests-cmdstan/cmdstan/stan/lib/stan_math", params.math_pr)
setupMakeLocal("3","clang", "clang++","","","-march=core2", "", "performance-tests-cmdstan/cmdstan/make/local")
sh """
cd performance-tests-cmdstan
git show HEAD --stat
echo "example-models/regression_tests/mother.stan" > all.tests
cat known_good_perf_all.tests >> all.tests
echo "" >> all.tests
cat shotgun_perf_all.tests >> all.tests
cat all.tests
cd cmdstan; make clean-all; git show HEAD --stat; make -j4 build
rm bin/stanc
cp ../../bin/stanc bin/stanc
make print-compiler-flags
make -j4 examples/bernoulli/bernoulli; ./bin/stanc --version; cd ..
echo "STANCFLAGS += --O1" >> cmdstan/make/local
./runPerformanceTests.py -j${env.PARALLEL} --overwrite-golds --runs=0 --tests-file all.tests --num-samples=20
./runPerformanceTests.py -j${env.PARALLEL} --runs=0 ../stanc3/test/integration/good
"""
}
xunit([GoogleTest(
deleteOutputFiles: false,
failIfNotNew: true,
pattern: 'performance-tests-cmdstan/performance.xml',
skipNoTestFiles: false,
stopProcessingIfError: false)
])
archiveArtifacts 'performance-tests-cmdstan/performance.xml'
}
}
post { always { sh "rm -rf ${env.WORKSPACE}/compile-end-to-end-O=1/*" }}
}
stage("Model end-to-end - GCC") {
agent {
docker {
image 'stanorg/ci:bleeding-edge-compilers'
label 'linux && triqs'
args '--pull always'
}
}
steps {
dir("${env.WORKSPACE}/compile-end-to-end-O=1"){
script {
unstash "Stanc3Setup"
unstash 'ubuntu-exe'
sh """
git clone --recursive --depth 50 https://github.com/stan-dev/performance-tests-cmdstan
"""
utils.checkout_pr("cmdstan", "performance-tests-cmdstan/cmdstan", params.cmdstan_pr)
utils.checkout_pr("stan", "performance-tests-cmdstan/cmdstan/stan", params.stan_pr)
utils.checkout_pr("math", "performance-tests-cmdstan/cmdstan/stan/lib/stan_math", params.math_pr)
setupMakeLocal("3","gcc","g++","","","-march=core2", "", "performance-tests-cmdstan/cmdstan/make/local")
sh """
cd performance-tests-cmdstan
git show HEAD --stat
echo "example-models/regression_tests/mother.stan" > all.tests
cat known_good_perf_all.tests >> all.tests
echo "" >> all.tests
cat shotgun_perf_all.tests >> all.tests
cat all.tests
cd cmdstan; make clean-all; git show HEAD --stat; make -j4 build
rm bin/stanc
cp ../../bin/stanc bin/stanc
make print-compiler-flags
make -j4 examples/bernoulli/bernoulli; ./bin/stanc --version; cd ..
echo "STANCFLAGS += --O1" >> cmdstan/make/local
./runPerformanceTests.py -j${env.PARALLEL} --overwrite-golds --runs=0 --tests-file all.tests --num-samples=20
./runPerformanceTests.py -j${env.PARALLEL} --runs=0 ../stanc3/test/integration/good
"""
}
xunit([GoogleTest(
deleteOutputFiles: false,
failIfNotNew: true,
pattern: 'performance-tests-cmdstan/performance.xml',
skipNoTestFiles: false,
stopProcessingIfError: false)
])
archiveArtifacts 'performance-tests-cmdstan/performance.xml'
}
}
post { always { sh "rm -rf ${env.WORKSPACE}/compile-end-to-end-O=1/*" }}
}
}
}
}
post {
always {
node("linux") {
recordIssues enabledForFailure: false, tool: clang()
}
}
success { script { utils.mailBuildResults("SUCCESSFUL") } }
unstable { script { utils.mailBuildResults("UNSTABLE") } }
failure { script { utils.mailBuildResults("FAILURE") } }
}
}