Widgets not being displayed in notebooks

[afloers]

Describe the bug
No widgets are displayed when running the quickstart notebook in a fresh tardis environment.

from tardis import run_tardis
sim = run_tardis("/Users/afloers/tardis_example.yml", virtual_packet_logging=True, show_convergence_plots=True, export_convergence_plots=True, log_level="INFO")

from tardis.visualization import ( shell_info_from_simulation, shell_info_from_hdf, LineInfoWidget, GrotrianWidget, )

shell_info_widget = shell_info_from_simulation(sim)
shell_info_widget.display()

line_info_widget = LineInfoWidget.from_simulation(sim)
line_info_widget.display()

To Reproduce
jupyter --version
IPython : 8.25.0
ipykernel : 6.29.4
ipywidgets : 7.8.0
jupyter_client : 8.6.2
jupyter_core : 5.7.2
jupyter_server : 2.14.1
jupyterlab : 4.2.2
nbclient : 0.10.0
nbconvert : 7.16.4
nbformat : 5.10.4
notebook : 7.2.1
qtconsole : not installed
traitlets : 5.14.3

Screenshots

System

• OS:

  • GNU/Linux
  • macOS

• Environment (conda list):

Name Version Build Channel
alabaster 0.7.16 pyhd8ed1ab_0 conda-forge
anyio 4.4.0 pyhd8ed1ab_0 conda-forge
appnope 0.1.4 pyhd8ed1ab_0 conda-forge
argon2-cffi 23.1.0 pyhd8ed1ab_0 conda-forge
argon2-cffi-bindings 21.2.0 py312h104f124_4 conda-forge
arrow 1.3.0 pyhd8ed1ab_0 conda-forge
astropy 6.1.1 py312h5dc8b90_0 conda-forge
astropy-iers-data 0.2024.6.17.0.31.35 pyhd8ed1ab_0 conda-forge
astropy-sphinx-theme 1.1 pyhd8ed1ab_0 conda-forge
asttokens 2.4.1 pyhd8ed1ab_0 conda-forge
async-lru 2.0.4 pyhd8ed1ab_0 conda-forge
atk-1.0 2.38.0 h4bec284_2 conda-forge
attrs 23.2.0 pyh71513ae_0 conda-forge
babel 2.14.0 pyhd8ed1ab_0 conda-forge
beautifulsoup4 4.12.3 pyha770c72_0 conda-forge
black 22.3.0 pyhd8ed1ab_0 conda-forge
bleach 6.1.0 pyhd8ed1ab_0 conda-forge
blosc 1.21.5 hafa3907_1 conda-forge
brotli 1.1.0 h0dc2134_1 conda-forge
brotli-bin 1.1.0 h0dc2134_1 conda-forge
brotli-python 1.1.0 py312heafc425_1 conda-forge
bzip2 1.0.8 h10d778d_5 conda-forge
c-ares 1.28.1 h10d778d_0 conda-forge
c-blosc2 2.14.4 h0ae8482_1 conda-forge
ca-certificates 2024.6.2 h8857fd0_0 conda-forge
cached-property 1.5.2 hd8ed1ab_1 conda-forge
cached_property 1.5.2 pyha770c72_1 conda-forge
cairo 1.18.0 h99e66fa_0 conda-forge
certifi 2024.6.2 pyhd8ed1ab_0 conda-forge
cffi 1.16.0 py312h38bf5a0_0 conda-forge
charset-normalizer 3.3.2 pyhd8ed1ab_0 conda-forge
click 8.1.7 unix_pyh707e725_0 conda-forge
colorama 0.4.6 pyhd8ed1ab_0 conda-forge
comm 0.2.2 pyhd8ed1ab_0 conda-forge
commonmark 0.9.1 py_0 conda-forge
contourpy 1.2.1 py312h9230928_0 conda-forge
coverage 7.5.3 py312hbd25219_0 conda-forge
cycler 0.12.1 pyhd8ed1ab_0 conda-forge
dataclasses 0.8 pyhc8e2a94_3 conda-forge
debugpy 1.8.1 py312hede676d_0 conda-forge
decorator 5.1.1 pyhd8ed1ab_0 conda-forge
defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge
docutils 0.20.1 py312hb401068_3 conda-forge
dot2tex 2.11.3 pyhd8ed1ab_0 conda-forge
entrypoints 0.4 pyhd8ed1ab_0 conda-forge
exceptiongroup 1.2.0 pyhd8ed1ab_2 conda-forge
executing 2.0.1 pyhd8ed1ab_0 conda-forge
expat 2.6.2 h73e2aa4_0 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 h77eed37_2 conda-forge
fontconfig 2.14.2 h5bb23bf_0 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.53.0 py312hbd25219_0 conda-forge
fqdn 1.5.1 pyhd8ed1ab_0 conda-forge
freetype 2.12.1 h60636b9_2 conda-forge
fribidi 1.0.10 hbcb3906_0 conda-forge
future 1.0.0 pyhd8ed1ab_0 conda-forge
gdk-pixbuf 2.42.12 ha587570_0 conda-forge
gettext 0.22.5 h5ff76d1_2 conda-forge
gettext-tools 0.22.5 h5ff76d1_2 conda-forge
giflib 5.2.2 h10d778d_0 conda-forge
git-lfs 3.5.1 h694c41f_0 conda-forge
gmp 6.3.0 h73e2aa4_1 conda-forge
gmpy2 2.1.5 py312hd98c385_1 conda-forge
graphite2 1.3.13 h73e2aa4_1003 conda-forge
graphviz 11.0.0 hc9017ca_0 conda-forge
gtk2 2.24.33 h8ca4665_4 conda-forge
gts 0.7.6 h53e17e3_4 conda-forge
h11 0.14.0 pyhd8ed1ab_0 conda-forge
h2 4.1.0 pyhd8ed1ab_0 conda-forge
h5py 3.11.0 nompi_py312hfc94b03_102 conda-forge
harfbuzz 8.5.0 h053f038_0 conda-forge
hdf5 1.14.3 nompi_h687a608_105 conda-forge
hpack 4.0.0 pyh9f0ad1d_0 conda-forge
httpcore 1.0.5 pyhd8ed1ab_0 conda-forge
httpx 0.27.0 pyhd8ed1ab_0 conda-forge
hyperframe 6.0.1 pyhd8ed1ab_0 conda-forge
icu 73.2 hf5e326d_0 conda-forge
idna 3.7 pyhd8ed1ab_0 conda-forge
imagesize 1.4.1 pyhd8ed1ab_0 conda-forge
importlib-metadata 7.1.0 pyha770c72_0 conda-forge
importlib_metadata 7.1.0 hd8ed1ab_0 conda-forge
importlib_resources 6.4.0 pyhd8ed1ab_0 conda-forge
iniconfig 2.0.0 pyhd8ed1ab_0 conda-forge
ipykernel 6.29.4 pyh57ce528_0 conda-forge
ipython 8.25.0 pyh707e725_0 conda-forge
ipython_genutils 0.2.0 pyhd8ed1ab_1 conda-forge
ipywidgets 7.8.0 pyhd8ed1ab_0 conda-forge
isoduration 20.11.0 pyhd8ed1ab_0 conda-forge
jedi 0.19.1 pyhd8ed1ab_0 conda-forge
jinja2 3.1.4 pyhd8ed1ab_0 conda-forge
json5 0.9.25 pyhd8ed1ab_0 conda-forge
jsonpointer 3.0.0 py312hb401068_0 conda-forge
jsonschema 4.22.0 pyhd8ed1ab_0 conda-forge
jsonschema-specifications 2023.12.1 pyhd8ed1ab_0 conda-forge
jsonschema-with-format-nongpl 4.22.0 pyhd8ed1ab_0 conda-forge
jupyter-lsp 2.2.5 pyhd8ed1ab_0 conda-forge
jupyter_client 8.6.2 pyhd8ed1ab_0 conda-forge
jupyter_core 5.7.2 py312hb401068_0 conda-forge
jupyter_events 0.10.0 pyhd8ed1ab_0 conda-forge
jupyter_server 2.14.1 pyhd8ed1ab_0 conda-forge
jupyter_server_terminals 0.5.3 pyhd8ed1ab_0 conda-forge
jupyterlab 4.2.2 pyhd8ed1ab_0 conda-forge
jupyterlab_pygments 0.3.0 pyhd8ed1ab_1 conda-forge
jupyterlab_server 2.27.2 pyhd8ed1ab_0 conda-forge
jupyterlab_widgets 1.1.7 pyhd8ed1ab_0 conda-forge
kiwisolver 1.4.5 py312h49ebfd2_1 conda-forge
krb5 1.21.2 hb884880_0 conda-forge
latexcodec 2.0.1 pyh9f0ad1d_0 conda-forge
lcms2 2.16 ha2f27b4_0 conda-forge
lerc 4.0.0 hb486fe8_0 conda-forge
libaec 1.1.3 h73e2aa4_0 conda-forge
libasprintf 0.22.5 h5ff76d1_2 conda-forge
libasprintf-devel 0.22.5 h5ff76d1_2 conda-forge
libblas 3.9.0 22_osx64_openblas conda-forge
libbrotlicommon 1.1.0 h0dc2134_1 conda-forge
libbrotlidec 1.1.0 h0dc2134_1 conda-forge
libbrotlienc 1.1.0 h0dc2134_1 conda-forge
libcblas 3.9.0 22_osx64_openblas conda-forge
libcurl 8.8.0 hf9fcc65_0 conda-forge
libcxx 17.0.6 h88467a6_0 conda-forge
libdeflate 1.20 h49d49c5_0 conda-forge
libedit 3.1.20191231 h0678c8f_2 conda-forge
libev 4.33 h10d778d_2 conda-forge
libexpat 2.6.2 h73e2aa4_0 conda-forge
libffi 3.4.2 h0d85af4_5 conda-forge
libgd 2.3.3 h0dceb68_9 conda-forge
libgettextpo 0.22.5 h5ff76d1_2 conda-forge
libgettextpo-devel 0.22.5 h5ff76d1_2 conda-forge
libgfortran 5.0.0 13_2_0_h97931a8_3 conda-forge
libgfortran5 13.2.0 h2873a65_3 conda-forge
libglib 2.80.2 h736d271_1 conda-forge
libiconv 1.17 hd75f5a5_2 conda-forge
libintl 0.22.5 h5ff76d1_2 conda-forge
libintl-devel 0.22.5 h5ff76d1_2 conda-forge
libjpeg-turbo 3.0.0 h0dc2134_1 conda-forge
liblapack 3.9.0 22_osx64_openblas conda-forge
libllvm14 14.0.6 hc8e404f_4 conda-forge
libnghttp2 1.58.0 h64cf6d3_1 conda-forge
libopenblas 0.3.27 openmp_hfef2a42_0 conda-forge
libpng 1.6.43 h92b6c6a_0 conda-forge
librsvg 2.58.1 h368d7ee_0 conda-forge
libsodium 1.0.18 hbcb3906_1 conda-forge
libsqlite 3.46.0 h1b8f9f3_0 conda-forge
libssh2 1.11.0 hd019ec5_0 conda-forge
libtiff 4.6.0 h129831d_3 conda-forge
libwebp 1.4.0 hc207709_0 conda-forge
libwebp-base 1.4.0 h10d778d_0 conda-forge
libxcb 1.16 h0dc2134_0 conda-forge
libxml2 2.12.7 h3e169fe_1 conda-forge
libxslt 1.1.39 h03b04e6_0 conda-forge
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llvm-openmp 18.1.7 h15ab845_0 conda-forge
llvmlite 0.42.0 py312h534208b_1 conda-forge
lxml 5.2.2 py312h1aa9a54_0 conda-forge
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markupsafe 2.1.5 py312h41838bb_0 conda-forge
matplotlib-base 3.8.4 py312hb6d62fa_2 conda-forge
matplotlib-inline 0.1.7 pyhd8ed1ab_0 conda-forge
mistune 3.0.2 pyhd8ed1ab_0 conda-forge
mpc 1.3.1 h81bd1dd_0 conda-forge
mpfr 4.2.1 h4f6b447_1 conda-forge
mpmath 1.3.0 pyhd8ed1ab_0 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
mypy_extensions 1.0.0 pyha770c72_0 conda-forge
nbclassic 1.1.0 pyhd8ed1ab_0 conda-forge
nbclient 0.10.0 pyhd8ed1ab_0 conda-forge
nbconvert 7.16.4 hd8ed1ab_1 conda-forge
nbconvert-core 7.16.4 pyhd8ed1ab_1 conda-forge
nbconvert-pandoc 7.16.4 hd8ed1ab_1 conda-forge
nbformat 5.10.4 pyhd8ed1ab_0 conda-forge
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nest-asyncio 1.6.0 pyhd8ed1ab_0 conda-forge
networkx 3.3 pyhd8ed1ab_1 conda-forge
notebook 7.2.1 pyhd8ed1ab_0 conda-forge
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numba 0.59.1 py312h04e34b5_0 conda-forge
numexpr 2.10.0 py312h1171441_0 conda-forge
numpy 1.26.4 py312he3a82b2_0 conda-forge
numpydoc 1.7.0 pyhd8ed1ab_1 conda-forge
openjpeg 2.5.2 h7310d3a_0 conda-forge
openssl 3.3.1 h87427d6_0 conda-forge
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pip 24.0 pyhd8ed1ab_0 conda-forge
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pkgutil-resolve-name 1.3.10 pyhd8ed1ab_1 conda-forge
platformdirs 4.2.2 pyhd8ed1ab_0 conda-forge
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prometheus_client 0.20.0 pyhd8ed1ab_0 conda-forge
prompt-toolkit 3.0.47 pyha770c72_0 conda-forge
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pthread-stubs 0.4 hc929b4f_1001 conda-forge
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pycparser 2.22 pyhd8ed1ab_0 conda-forge
pyerfa 2.0.1.4 py312h5dc8b90_1 conda-forge
pygments 2.18.0 pyhd8ed1ab_0 conda-forge
pygraphviz 1.13 py312h6908add_1 conda-forge
pyobjc-core 10.3.1 py312he77c50b_0 conda-forge
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pyparsing 3.1.2 pyhd8ed1ab_0 conda-forge
pysocks 1.7.1 pyha2e5f31_6 conda-forge
pytables 3.9.2 py312hf575446_2 conda-forge
pytest 8.2.2 pyhd8ed1ab_0 conda-forge
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pytest-metadata 3.1.1 pyhd8ed1ab_0 conda-forge
python 3.12.4 h37a9e06_0_cpython conda-forge
python-dateutil 2.9.0 pyhd8ed1ab_0 conda-forge
python-fastjsonschema 2.20.0 pyhd8ed1ab_0 conda-forge
python-json-logger 2.0.7 pyhd8ed1ab_0 conda-forge
python-tzdata 2024.1 pyhd8ed1ab_0 conda-forge
python_abi 3.12 4_cp312 conda-forge
pytz 2024.1 pyhd8ed1ab_0 conda-forge
pyyaml 6.0.1 py312h104f124_1 conda-forge
pyzmq 26.0.3 py312ha04878a_0 conda-forge
qgrid 1.3.1 pyhd8ed1ab_4 conda-forge
radioactivedecay 0.5.1 pyhd8ed1ab_0 conda-forge
readline 8.2 h9e318b2_1 conda-forge
recommonmark 0.7.1 pyhd8ed1ab_0 conda-forge
referencing 0.35.1 pyhd8ed1ab_0 conda-forge
requests 2.32.3 pyhd8ed1ab_0 conda-forge
rfc3339-validator 0.1.4 pyhd8ed1ab_0 conda-forge
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rpds-py 0.18.1 py312ha47ea1c_0 conda-forge
ruff 0.4.9 py312h8b25c6c_0 conda-forge
scipy 1.13.1 py312hb9702fa_0 conda-forge
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six 1.16.0 pyh6c4a22f_0 conda-forge
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sphinxcontrib-devhelp 1.0.6 pyhd8ed1ab_0 conda-forge
sphinxcontrib-htmlhelp 2.0.5 pyhd8ed1ab_0 conda-forge
sphinxcontrib-jquery 4.1 pyhd8ed1ab_0 conda-forge
sphinxcontrib-jsmath 1.0.1 pyhd8ed1ab_0 conda-forge
sphinxcontrib-qthelp 1.0.7 pyhd8ed1ab_0 conda-forge
sphinxcontrib-serializinghtml 1.1.10 pyhd8ed1ab_0 conda-forge
stack_data 0.6.2 pyhd8ed1ab_0 conda-forge
sympy 1.12.1 pypyh2585a3b_103 conda-forge
tabulate 0.9.0 pyhd8ed1ab_1 conda-forge
tardis 0.0.0 pypi_0 pypi
tenacity 8.4.1 pyhd8ed1ab_0 conda-forge
terminado 0.18.1 pyh31c8845_0 conda-forge
tinycss2 1.3.0 pyhd8ed1ab_0 conda-forge
tk 8.6.13 h1abcd95_1 conda-forge
toml 0.10.2 pyhd8ed1ab_0 conda-forge
tomli 2.0.1 pyhd8ed1ab_0 conda-forge
tornado 6.4.1 py312hbd25219_0 conda-forge
tqdm 4.66.4 pyhd8ed1ab_0 conda-forge
traitlets 5.14.3 pyhd8ed1ab_0 conda-forge
typed-ast 1.5.5 py312h104f124_1 conda-forge
types-python-dateutil 2.9.0.20240316 pyhd8ed1ab_0 conda-forge
typing-extensions 4.12.2 hd8ed1ab_0 conda-forge
typing_extensions 4.12.2 pyha770c72_0 conda-forge
typing_utils 0.1.0 pyhd8ed1ab_0 conda-forge
tzdata 2024a h0c530f3_0 conda-forge
uri-template 1.3.0 pyhd8ed1ab_0 conda-forge
urllib3 2.2.2 pyhd8ed1ab_0 conda-forge
wcwidth 0.2.13 pyhd8ed1ab_0 conda-forge
webcolors 24.6.0 pyhd8ed1ab_0 conda-forge
webencodings 0.5.1 pyhd8ed1ab_2 conda-forge
websocket-client 1.8.0 pyhd8ed1ab_0 conda-forge
wheel 0.43.0 pyhd8ed1ab_1 conda-forge
widgetsnbextension 3.6.6 pyhd8ed1ab_0 conda-forge
xorg-libxau 1.0.11 h0dc2134_0 conda-forge
xorg-libxdmcp 1.1.3 h35c211d_0 conda-forge
xz 5.2.6 h775f41a_0 conda-forge
yaml 0.2.5 h0d85af4_2 conda-forge
zeromq 4.3.5 hde137ed_4 conda-forge
zipp 3.19.2 pyhd8ed1ab_0 conda-forge
zlib 1.3.1 h87427d6_1 conda-forge
zlib-ng 2.0.7 hb7f2c08_0 conda-forge
zstd 1.5.6 h915ae27_0 conda-forge
Additional context

[andrewfullard]

See also #2599 and #1954 (which is basically a duplicate from a couple of years ago)

[andrewfullard]

Please test the latest dev build of TARDIS with qgridnext installed via pip.