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ci-additional.yaml
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name: CI Additional
on:
push:
branches:
- "main"
pull_request:
branches:
- "*"
workflow_dispatch: # allows you to trigger manually
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
jobs:
detect-ci-trigger:
name: detect ci trigger
runs-on: ubuntu-latest
if: |
github.repository == 'xarray-contrib/flox'
&& (github.event_name == 'push' || github.event_name == 'pull_request')
outputs:
triggered: ${{ steps.detect-trigger.outputs.trigger-found }}
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 2
- uses: xarray-contrib/[email protected]
id: detect-trigger
with:
keyword: "[skip-ci]"
doctest:
name: Doctests
runs-on: "ubuntu-latest"
needs: detect-ci-trigger
if: needs.detect-ci-trigger.outputs.triggered == 'false'
defaults:
run:
shell: bash -l {0}
env:
CONDA_ENV_FILE: ci/environment.yml
PYTHON_VERSION: "3.12"
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0 # Fetch all history for all branches and tags.
- name: set environment variables
run: |
echo "TODAY=$(date +'%Y-%m-%d')" >> $GITHUB_ENV
- name: Setup micromamba
uses: mamba-org/setup-micromamba@v1
with:
environment-file: ${{env.CONDA_ENV_FILE}}
environment-name: flox-tests
init-shell: bash
cache-environment: true
cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}"
create-args: |
python=${{ env.PYTHON_VERSION }}
- name: Install flox
run: |
python -m pip install --no-deps -e .
- name: Version info
run: |
conda info -a
conda list
- name: Run doctests
run: |
python -m pytest --doctest-modules \
flox/aggregations.py flox/core.py flox/xarray.py \
--ignore flox/tests \
--cov=./ --cov-report=xml
- name: Upload code coverage to Codecov
uses: codecov/[email protected]
with:
file: ./coverage.xml
flags: unittests
env_vars: RUNNER_OS
name: codecov-umbrella
fail_ci_if_error: false
mypy:
name: Mypy
runs-on: "ubuntu-latest"
needs: detect-ci-trigger
if: needs.detect-ci-trigger.outputs.triggered == 'false'
defaults:
run:
shell: bash -l {0}
env:
CONDA_ENV_FILE: ci/environment.yml
PYTHON_VERSION: "3.12"
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0 # Fetch all history for all branches and tags.
- name: set environment variables
run: |
echo "TODAY=$(date +'%Y-%m-%d')" >> $GITHUB_ENV
- name: Setup micromamba
uses: mamba-org/setup-micromamba@v1
with:
environment-file: ${{env.CONDA_ENV_FILE}}
environment-name: flox-tests
init-shell: bash
cache-environment: true
cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}"
create-args: |
python=${{ env.PYTHON_VERSION }}
- name: Install flox
run: |
python -m pip install --no-deps -e .
- name: Version info
run: |
conda info -a
conda list
- name: Install mypy
run: |
python -m pip install mypy
- name: Run mypy
run: |
mkdir .mypy_cache
python -m mypy --install-types --non-interactive --cache-dir=.mypy_cache/ --cobertura-xml-report mypy_report
- name: Upload mypy coverage to Codecov
uses: codecov/[email protected]
with:
file: mypy_report/cobertura.xml
flags: mypy
env_vars: PYTHON_VERSION
name: codecov-umbrella
fail_ci_if_error: false