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Visualization of quality metrics to show prior to filtering. #1

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UCDNJJ opened this issue Sep 24, 2024 · 1 comment
Open
2 tasks

Visualization of quality metrics to show prior to filtering. #1

UCDNJJ opened this issue Sep 24, 2024 · 1 comment
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@dyuan1111
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enhancement New feature or request

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@UCDNJJ
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UCDNJJ commented Sep 24, 2024

  • Add common visualization code to verify/determine thresholds being used on various QC metrics. Should be a general plotting function. Name and module:sciduck.pl.qc_metrics()?
  • Include in tutorial notebooks.
@UCDNJJ UCDNJJ added the enhancement New feature or request label Sep 24, 2024
@UCDNJJ UCDNJJ mentioned this issue Sep 24, 2024
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@UCDNJJ UCDNJJ assigned UCDNJJ and dyuan1111 and unassigned UCDNJJ Sep 24, 2024
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UCDNJJ commented Nov 1, 2024

@dyuan1111 For visualization it would be helpful to allow no grouping something like: sd.pl.violin(adata, groupby=None, y='Number of UMIs', x_label_rotation=20, size=12, ylines=[1000,2000,3000]). I get an error from this command.

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