Characterization of aberrant splicing in pediatric central nervous system tumors reveals CLK1 as a candidate oncogenic dependency
Ammar S. Naqvi, Ryan J. Corbett, Priyanka Seghal, Karina L. Conkrite, Komal S. Rathi, Brian M. Ennis, Katharina E Hayer, Bo Zhang, Miguel A. Brown, Daniel P. Miller, Adam A. Kraya, Joseph M. Dybas, Zhuangzhuang Geng, Christopher Blackden, Shebheel Arif, Antonia Chroni, Aditya Lahiri, Madison L. Hollawell, Phillip B. Storm, Jessica B. Foster, Matuesz Koptyra, Peter J. Madsen, Sharon J. Diskin, Andrei Thomas Tikhonenko, Adam C. Resnick, Jo Lynne Rokita
docker pull pgc-images.sbgenomics.com/d3b-bixu/pbta-splicing:v1.0.0
docker run --platform linux/amd64 --name <CONTAINER_NAME> -d -e PASSWORD=pass -p 8787:8787 -v $PWD:/home/rstudio/pbta-splicing pgc-images.sbgenomics.com/d3b-bixu/pbta-splicing:v1.0.0
docker exec -ti pbta-splicing bash
bash download_data.sh
bash scripts/run_analyses.sh
For questions, please submit an issue or send an email to Jo Lynne Rokita (@jharenza): [email protected] and Ammar S. Naqvi (@naqvia): [email protected].