Team Neural Network Github Repo Google Drive
- alignment_VT61209.fa - fasta file of nucleotide alignment across 24 species.
- raw_VT61209.fa - raw sequences
- bcd
- bcd_FlyReg.fm - the occurance of each letter in TFBS
- bcd_FlyReg.png - What the Postion Weight Matrix of BCD Looks like
- occurance_bcd_VT61209.fa.csv - Using program to map presence of BCD across VT61209
- kvonClassification - different ways to classifcy each enhancer region's function
- classification_table3_21Aug2018.csv
- classification_table2_24July2018.csv
- classification_table1_24July2018.csv
Example Fasta header:
VT0847|1|MEMB005B|-|2607
- VT0847: Region ID
- 1: positive presence of expression
- MEMB005B: species ID
- -: read from the negative strand
- 2607: length of sequence in bp