Merge pull request #85 from FAIRdom/master

add Stuart screenshot class additions

pages/collaborations/plant-is-and-miappe.md

@@ -10,7 +10,7 @@ The objective of the Plant A+ project is to develop tools to integrate and analy
 
 Custom Metadata allows FAIRDOM-SEEK entities to have their metadata extended with key/value pairs, controlled by metadata types that can be validated, and set as required or optional. Custom Metadata for MIAPPE were specified and applied to the Investigations and Studies, along with an Excel template to populate multiple Studies as a batch process. Support for ontology based controlled vocabularies, derived from the [Ontology Lookup Service (OLS)](https://www.ebi.ac.uk/ols/index), was also added, for both Sample metadata and the Custom metadata extensions.
 
-{% include image.html file="collaborations/plants-miappe/custom-metadata.png" alt="MIAPPE Custom Metadata" click=true %}
+{% include image.html file="collaborations/plants-miappe/custom-metadata.png" alt="MIAPPE Custom Metadata" click=true class='screenshot' %}
 
 
 In summary, during the first phase of support to the Plant A+ demonstrator project FAIRDOM-SEEK was extended to achieve the following:  

pages/fairdom_in_use/NFDI4.md

@@ -11,6 +11,6 @@ The FAIRDOM-SEEK platform is mainly used as backend to enter and store study-lev
 
 The study documents and resources stored in the FAIRDOM-SEEK component include study-protocol templates and data dictionaries as well as information on study-metadata structures – such as data models that describe study subjects and their clinical parameters – in addition to treatment outcomes and similar information. Additionally, direct links to primary resources and websites for the studies are included.
 
-{% include image.html file="NFDI4Health.png" alt="NFDI4Health" max-width='40em' click=true %}
+{% include image.html file="NFDI4Health.png" alt="NFDI4Health" click=true class='screenshot' %}
 
 [NFDI4Health Taskforce Covid-19](https://www.nfdi4health.de/en/task-force-covid-19.html)

pages/fairdom_in_use/fairdom_hubs/Datahub.md

@@ -31,4 +31,4 @@ This comprehensive suite of features ensures that DataHub not only supports the
 
 [DataHub (exlir-belgium.org)](https://datahub.elixir-belgium.org/)
 
-{% include image.html file="DataHub.png" alt="Data Hub" %}
+{% include image.html file="DataHub.png" alt="Data Hub" class='screenshot' %}

pages/fairdom_in_use/fairdom_hubs/Leipzighub.md

@@ -8,4 +8,4 @@ toc: false
 The [Leipzig Health Atlas](https://www.health-atlas.de) is another **Project Hub** supported by the FAIRDOM Consortium. This is used by the Medical Oncologits systems biologists and clinical trials groups to manage, organise and store models data and metadata on psecific use cases for their related medical research fields.
 
 
-{% include image.html file="Leipzig.png" alt="Leipzig Health Atlas SEEK" %}
+{% include image.html file="Leipzig.png" alt="Leipzig Health Atlas SEEK" click=true class='screenshot' %}

pages/fairdom_in_use/fairdom_hubs/fairdomhub.md

@@ -10,7 +10,7 @@ FAIRDOMHub enables researchers to organize, share and publish data, models and p
 By using the FAIRDOMHub, researchers can achieve more effective exchange with geographically distributed collaborators during projects,
 ensure results are sustained and preserved and generate reproducible publications that adhere to the FAIR guiding principles of data stewardship.
 
-{% include image.html file="FAIRDOMHub.png" alt="FAIRDOM Hub" %}
+{% include image.html file="FAIRDOMHub.png" alt="FAIRDOM Hub" class='screenshot' %}
 
 
 

pages/fairdom_in_use/fairdom_projects/leipzig.md

@@ -12,4 +12,6 @@ redirect_from:
 The [Leipzig Health Atlas](https://www.health-atlas.de) is another **Project Hub** supported by the FAIRDOM Consortium. This is used by the Medical Oncologits systems biologists and clinical trials groups to manage, organise and store models data and metadata on psecific use cases for their related medical research fields.
 
 
-{% include image.html file="Leipzig.png" alt="Leipzig Health Atlas SEEK" class="screenshot" %}
+
+{% include image.html file="Leipzig.png" alt="Leipzig Health Atlas SEEK" click=true class='screenshot' %}
+

pages/fairdom_in_use/fairdom_projects/nfdi4health.md

@@ -11,7 +11,8 @@ The Local Data Hub (LDH) is the main local component and connector of the federa
 
 Adhering to the fundamental FAIR principles (Findable, Accessible, Interoperable, Reusable), the LDH ensures that stored information is easily discoverable, accessible to authorized users, interoperable across various systems, and available for reuse in subsequent research endeavors. 
 
-{% include image.html file="fairdom_in_use/nfdi4health1.png" alt="NFDI4Health system" class="screenshot" %}
+
+{% include image.html file="fairdom_in_use/nfdi4health1.png" alt="NFDI4Health system" click=true class='screenshot' %}
 
 The Local Data Hub within the NFDI4Health ecosystem offers a comprehensive suite of features to enhance research collaboration and data management. It systematically organizes information related to local research, ensuring easy navigation and accessibility. The hub creates meaningful links between domain-specific metadata and data from local studies, facilitating a cohesive research environment. With fine-grained access rights management, it allows precise control over data access. The Local Data Hub supports programmatic access (API), promoting interoperability and data exchange with analytical tools like DataSHIELD or Personal Health Train. Additionally, it facilitates the sharing of public metadata by submitting data to the German Health Study Hub, another core service of NFDI4Health.
 
@@ -26,6 +27,7 @@ The SEEK-based Local Data Hub now fully represents the comprehensive NFDI4Health
 
 Extended Metadata supports the definition of additional metadata attributes for a particular type, enabling adherence to specific standards (e.g., NFDI4Health MDS). While not directly visible to users, these attributes are associated with a particular attribute type, marked as optional or mandatory, and validated against. Extended Metadata works similarly to Samples, sharing code and defining attributes with names linked to a SampleAttributeType.
 
+
 {% include image.html file="fairdom_in_use/nfdi4health2.png" alt="screenshot of the architecture of Extended Metadata" class="screenshot" caption="screenshot of the architecture of Extended Metadata" %}
 
 
@@ -47,8 +49,10 @@ Moreover, users can define Nested Extended Metadata, introducing a hierarchical
 
 It is worth mentioning that users can easily access extended metadata through the user interface or the API. The API extends possibilities, enabling interaction with remote platforms like the German Health Study Hub.
 
+
 {% include image.html file="fairdom_in_use/nfdi4health3.png" alt="screenshot of MDS implementation using extended metadata function" class="screenshot" caption="screenshot of MDS implementation using extended metadata function" %}
 
 {% include image.html file="fairdom_in_use/nfdi4health4.png" alt="screenshot of accessing MDS in SEEK through the user interface or the JSON API" class="screenshot" caption="screenshot of accessing MDS in SEEK through the user interface or the JSON API" %}
 
 
+

pages/fairdom_in_use/fairdom_projects/plant-is-and-miappe.md

@@ -30,7 +30,9 @@ The objective of the Plant A+ project is to develop tools to integrate and analy
 Extended Metadata allows FAIRDOM-SEEK entities to have their metadata extended with key/value pairs, controlled by metadata types that can be validated, and set as required or optional.
 Extended Metadata for MIAPPE were specified and applied to the Investigations and Studies, along with an Excel template to populate multiple Studies as a batch process. Support for ontology based controlled vocabularies, derived from the [Ontology Lookup Service (OLS)](https://www.ebi.ac.uk/ols/index), was also added, for both Sample metadata and the Extended metadata extensions.
 
-{% include image.html file="collaborations/plants-miappe/custom-metadata.png" alt="MIAPPE Extended Metadata" click=true class="screenshot" %}
+
+{% include image.html file="collaborations/plants-miappe/custom-metadata.png" alt="MIAPPE Extended Metadata" click=true class='screenshot' %}
+
 
 In future, they plan to add a user interface for FAIRDOM-SEEK administrators to define their own Extended Metadata extensions.
 

pages/fairdom_in_use/fairdomhub.md

@@ -12,7 +12,8 @@ FAIRDOMHub enables researchers to organize, share and publish data, models and p
 By using the FAIRDOMHub, researchers can achieve more effective exchange with geographically distributed collaborators during projects,
 ensure results are sustained and preserved and generate reproducible publications that adhere to the FAIR guiding principles of data stewardship.
 
-{% include image.html file="FAIRDOMHub.png" alt="FAIRDOM Hub" class="screenshot" %}
+
+{% include image.html file="FAIRDOMHub.png" alt="FAIRDOM Hub" click=true class='screenshot' %}