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Pull requests: NVIDIA/bionemo-framework

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Pull requests list

bump version for pillow to avoid the CVE
#457 opened Nov 20, 2024 by polinabinder1 Loading…
1
Atom and bond features enhancement New feature or request
#453 opened Nov 19, 2024 by sveccham Loading…
@sveccham
1
Explore esm2 training instability 20241119
#450 opened Nov 19, 2024 by sichu2023 • Draft
BugFix: fix bugs on bionemo-size-aware-batching bug Something isn't working
#449 opened Nov 18, 2024 by guoqing-zhou Loading…
2 of 5 tasks
@guoqing-zhou
12
Use torch.finfo settings for eps optionally
#448 opened Nov 18, 2024 by jstjohn • Draft
8
Turn off all fusion to test ESM2 pretraining stability
#445 opened Nov 18, 2024 by sichu2023 • Draft
Refactor SCDL Row Feature Index for Performance Improvement
#443 opened Nov 15, 2024 by savitha-eng • Draft
5 tasks
1
Amgen's AMPLIFY Port contribution any PRs coming in as contributions from folks outside of bionemo fw engineering team at NVIDIA SKIP_CI
#442 opened Nov 15, 2024 by ynashed • Draft
5 tasks
Update docs to remove NGC config requirements documentation Improvements or additions to documentation SKIP_CI
#439 opened Nov 15, 2024 by tshimko-nv Loading…
2
Initial compatibility testing images
#438 opened Nov 15, 2024 by malcolmgreaves • Draft
5 tasks
@malcolmgreaves
JSON -> YAML for CLI
#436 opened Nov 14, 2024 by skothenhill-nv Loading…
@skothenhill-nv
26
Mg/bionemo noodles py o3
#435 opened Nov 14, 2024 by malcolmgreaves • Draft
5 tasks
@malcolmgreaves
1
initial config for partial conv in JET of esm2 in bionemo2
#428 opened Nov 13, 2024 by dorotat-nv Loading…
5
ESM2 Tutorial Updates
#426 opened Nov 12, 2024 by farhadrgh Loading…
6
Introducing trt_compile() and example how to use it
#407 opened Nov 6, 2024 by borisfom Loading…
5 tasks
Polinabinder/profiling
#397 opened Nov 4, 2024 by polinabinder1 • Draft
Savitha/geneformer profiling
#394 opened Nov 4, 2024 by savitha-eng • Draft
5 tasks
Savitha/integrate scdl into geneformer megatron compatible
#389 opened Oct 31, 2024 by savitha-eng • Draft
@savitha-eng
2
Manually pin pypi versions
#386 opened Oct 30, 2024 by pstjohn • Draft
11
use torchmetrics ppl logging
#382 opened Oct 30, 2024 by pstjohn • Draft
4
Draft: GH200 support
#369 opened Oct 28, 2024 by gagank1 • Draft
5 tasks
Savitha/scdl geneformer integration
#363 opened Oct 25, 2024 by savitha-eng • Draft
5 tasks
3
add devcontainer flag to ci build
#359 opened Oct 24, 2024 by pstjohn • Draft
ESM2 Distributed Inference
#319 opened Oct 17, 2024 by farhadrgh • Draft
5 tasks
Integrate SCDL with Geneformer
#317 opened Oct 16, 2024 by savitha-eng • Draft
5 tasks
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