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SEAD 2.0 Publishing Services

Source repository for SEAD 2.0 publishing services. SEAD 2.0 is funded in large part by a grant from the National Science Foundation. The primary components of the SEAD 2.0 suite are: Curbee: a lightweight publishing workflow; PDT: a mongoDB repository of People, Data, Things used by the publishing services; SEAD Matchmaker: recommendation tool that selects repositories for deposit using information from PDT; services suite for a hybrid HPC storage server/repository that accepts deposits from the SEAD services. Used to develop IU SEAD Cloud at Indiana University, and a test HPC storage server/repository solution that runs at the National Data Service at NCSA.

Be on the lookout for a reorganization of this source code repository Fall 2016 for easier use of the component pieces of the SEAD 2.0 publishing services.

Steps to build:

  1. Checkout the Curbee repository from Github
git clone https://github.com/Data-to-Insight-Center/Curbee.git
  1. Move the to root directory and execute following command.
mvn clean install -DskipTests

Skipping tests will help as there's an intermittent test failure in sead-doi-service

This should build all modules needed for the SEAD services.

Steps to deploy on Tomcat:

  1. Copy the following .war files from relevant target directories into TOMCAT_HOME/webapps.
sead-c3pr.war
sead-dataone.war
sead-doi-service.war
va-workflow.war
metadata-gen.war
sead-mon.war
  1. Fix the endpoint URL's in following configuration files under webapps.
sead-c3pr/WEB-INF/classes/org/sead/api/util/default.properties
sead-dataone/WEB-INF/classes/org/sead/va/dataone/util/default.properties
sead-doi-service/WEB-INF/classes/org/seadva/services/util/doi.properties
va-workflow/WEB-INF/classes/org/sead/workflow/sead-wf.xml
metadata-gen/WEB-INF/classes/org/seadva/metadatagen/util/Config.properties
sead-mon/WEB-INF/classes/org/sead/monitoring/ui/util/default.properties
  1. Add a setenv.sh file under bin (if it's not already there) and set the -Dorg.apache.tomcat.util.buf.UDecoder.ALLOW_ENCODED_SLASH=true parameter to make sure the encoded URL requests work fine.

Ex:

export JAVA_OPTS="-Xss1024m -Xms512m -Xmx4096m -XX:MaxPermSize=2048m -Dorg.apache.tomcat.util.buf.UDecoder.ALLOW_ENCODED_SLASH=true -Dorg.apache.catalina.connector.CoyoteAdapter.ALLOW_BACKSLASH=true"
  1. If SEAD should run on https, follow the guide below to setup SSL on Tomcat. Make sure that you use Sun JDK instead of OpenJDK if you need SSL.

Ex: https://tomcat.apache.org/tomcat-7.0-doc/ssl-howto.html

  1. Start the server.

Now the API should be accessible through the following URL.

http://host:port/sead-c3pr/api/..

For more details on how to use the API, please refer to:

https://opensource.ncsa.illinois.edu/confluence/pages/viewpage.action?pageId=71139377

Full documentation of Curbee API is available at http://seadva-test.d2i.indiana.edu/sead-c3pr/index.html

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