A set of programs, scripts, and tutorials that make our life easier.
A collection of notebooks meant to instruct how to use the main features of packages useful for genomic research.
- Bioconductor Genomic Packages: An introduction and example of usage to GenomicRanges, GenomicAlignments, and Gviz packages.
A collection of functions that resemble base R plots syntax but outputs ggplots!
A command line tool that wraps Kent command line utilities for creating chain files, which are needed to convert genomic coordinates from one genomic build to another using liftover.
A command line tool that wraps STAR and some R code to align all fastq data present in the working directory (more for illustrative purposes and as a template, that you will need to adapt to your needs).