v0.4.1

New in CNVnator version 0.4.1:

• Listing content of CNVnator root file (option: -ls)
• Copying RD and SNP data to new root file (option: -cptrees)
• Python tool for whole genome circular plot of RD and BAF (plotcircular.py)
• Mask file for reference genome hg19 available in ExampleData/ (used with -mask option)
• Reading CNVnator root file using python module (pytools.io)

v0.4

New in CNVnator version 0.4:

• Support for single fasta.gz reference file (option -fasta)
• Using -lite option to create smaller root files
• Importing variant data from VCF file (options -vcf -idvar -mask)
• Plotting B-allele frequency (BAF) along with RD signal in -view mode
• Python tool for plotting and analyzing unphased BAF signal

v0.3.3

• Add CRAM support
• Add a basic genotype format into vcf output
• Add mouse genome mm9
• getopt patch

v0.3.2

Changing version to v0.3.2.
Updating Makefile to be compatible with ROOT6 and samtools(>1.0).
Adding new class EXOnator to work with exome/panel data.

v0.3.1

Changing Makefile to supoort ROOT install in a fixed location.

Changing version in Makefile from v0.3 to v0.3.1.