Fixes and reminders #6
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avehtari
requested changes
Aug 29, 2023
| @@ -7,7 +7,7 @@ Currently there are demos for BDA3 Chapters 2, 3, 4, 5, 6, 10, 11 and 12. | |||
| Furthermore there are demos for | |||
| [CmdStanR](https://github.com/stan-dev/cmdstanr), | |||
| [RStan](https://github.com/stan-dev/rstan) | |||
| [RStanARM](https://github.com/stan-dev/rstanarm). | |||
| [RStanARM](https://github.com/stan-dev/rstanarm). When running the R-scripts from Aalto Jupyter notebook, please make sure to set the parent directory to "~/notebooks/BDA_R_demos". | |||
| @@ -20,7 +20,7 @@ library(gridExtra) | |||
| library(tidyr) | |||
| library(latex2exp) | |||
| library(rprojroot) | |||
| root<-has_file(".BDA_R_demos_root")$make_fix_file() | |||
| root<-has_file(".BDA_R_demos_root")$make_fix_file() # Make sure to set parent directory to ~/notebooks/BDA_R_demos | |||
| @@ -81,7 +81,7 @@ plot_margpost <- | |||
| geom_line(aes(x = x, y = p), color='forestgreen') + | |||
| labs(x = expression(tau), y = TeX('$p(\\tau | y)$'), title = title1) + | |||
| scale_y_continuous(breaks = 0) + | |||
| xlim(c(0, 35)) | |||
| xlim(c(0, 40)) | |||
| @@ -1,5 +1,7 @@ | |||
| # Links to html versions of demos | |||
|
|
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| If running the CMDStanR demos on Aalto Jupyter, please make sure to have specified the location for CMDStanR: set_cmdstan_path('/coursedata/cmdstan'). | |||
There was a problem hiding this comment.
This should work automatically as soon as IT has fixed it
| @@ -194,7 +194,7 @@ mcmc_hist(draws_bin2, pars='oddsratio') | |||
| #' # Linear Gaussian model | |||
| #' | |||
| #' The following file has Kilpisjärvi summer month temperatures 1952-2013: | |||
| data_kilpis <- read.delim('kilpisjarvi-summer-temp.csv', sep = ';') | |||
| data_kilpis <- read.delim('~/BDA_R_demos/demos_rstan/kilpisjarvi-summer-temp.csv', sep = ';') | |||
| @@ -284,7 +284,7 @@ loo_compare(loo1, loo2) | |||
| #' # Comparison of k groups with hierarchical models | |||
| #' | |||
| #' Let's compare the temperatures in three summer months. | |||
| data_kilpis <- read.delim('kilpisjarvi-summer-temp.csv', sep = ';') | |||
| data_kilpis <- read.delim('~/BDA_R_demos/demos_rstan/kilpisjarvi-summer-temp.csv', sep = ';') | |||
| @@ -239,7 +239,7 @@ mcmc_hist(draws_bin2, pars='oddsratio') | |||
| The following file has Kilpisjärvi summer month temperatures 1952-2013: | |||
|
|
|||
| ```{r } | |||
| data_kilpis <- read.delim('kilpisjarvi-summer-temp.csv', sep = ';') | |||
| data_kilpis <- read.delim('~/BDA_R_demos/demos_rstan/kilpisjarvi-summer-temp.csv', sep = ';') | |||
| @@ -348,7 +348,7 @@ There is no practical difference between Gaussian and Student's t models. | |||
| Let's compare the temperatures in three summer months. | |||
|
|
|||
| ```{r } | |||
| data_kilpis <- read.delim('kilpisjarvi-summer-temp.csv', sep = ';') | |||
| data_kilpis <- read.delim('~/BDA_R_demos/demos_rstan/kilpisjarvi-summer-temp.csv', sep = ';') | |||
|
I noticed this open PR with several unresolved conversations. @davkoh ? |
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