3.12.0

Distro

• Bump tags for viewer and backend to 3.12.0
• Add dicom support to keycloak deployment option
• Add chrome tools node debug profiling

Caracal (backend service)

• Fix pathdb handle files with url unsafe iip files (#215)
• Check for either mongo binary (https://github.com/camicroscope/caracal/#169)
• Add paginated find
• Add count handler

Slideloader

• Hotfix for openslide on ARM systems
• DICOM annotation and API routes and utilities

Viewer

Accessibility and Standards Compliance

• Created GitHub workflow for accessibility checks
• Jest test for DrawerHelper JS
• Various HTML pages updated to comply with W3C standards

UI/UX Improvements and Fixes

• Adjustments for mobile view (e.g., overflow table scroll, button UI improvements)
• Enhanced responsiveness (e.g., Workbench HTML page, option dropdown UI)
• Clarity improvements (e.g., clearer instructions, fixing overlapping buttons)
• Loader addition and UI adjustments
• Transitioned from Google Form to GitHub issue link for feedback

Feature Additions and Enhancements

• Added Aria Labels to Image Links
• Added go back button and meta tag
• Improved signup page user experience and consistency
• Improved Slides Page Layout and User Guidance
• (Secret) dicom connect demo

Bug Fixes and Error Handling

• Fixed disabled zooming in mobile view
• Fixed various linting errors and tile loading issues

Code Refactoring and Maintenance

• Refactoring for improved footer reusability component
• Improved config handling and file organization

3.11.0

3.11.0

Version 3.11 of caMicroscope is at core about two new exciting additions to the platform! Thanks to @CGDogan for system-wide improvements and additions which have greatly expanded compatibility by including DICOM and Bioformats, and to @BryanGsep for work towards streamlined usability for machine learning tools.

Parallel to the release, caMicroscope has updated our website (https://camicroscope.github.io/), governance, the creator covenant, among other guides.

Distribution (https://github.com/camicroscope/Distro)

• Add configuration and route support for dicom server and related routes

Viewer (https://github.com/camicroscope/caMicroscope)

• Dicom and Bioformats Intergration (#647, #653, #655)
• Improved Machine Learning Toolkit (#658)

Backend (https://github.com/camicroscope/caracal)

• Faster dockerfile clone
• Add filesystem related handlers for DICOM
• Update node container base
• Update CI and tests
• Add a handler for finding a document using regex

Loader (https://github.com/camicroscope/SlideLoader)

• Add dicom and bioformats support
• Use the Image Decoders Base for Docker
• Refactor for relative path directories
• Refactor google drive related functionality

Tile Server (https://github.com/camicroscope/iipImage)

• Dicom and bioformats support and integration
• Use the Image Decoders Base for Docker

Dicom Server (https://github.com/camicroscope/dicomsrv)

• New service for dicom integration

3.10.2

Distribution

• add keycloak option
• update keycloak documents
• Update default google login option

Viewer

• point to point
• Fixed Workbench Navbar Overlapping #580
• camicroscope/caMicroscope#579
• style: art Fixed fat hamburger icon & alignment issues of dropdown issue#596 #597
• Styled export.html #601
• fix: bug Responsiveness issues of workbench section #605 #605
• camicroscope/caMicroscope#630
• camicroscope/caMicroscope#635
• camicroscope/caMicroscope#620
• camicroscope/caMicroscope#614
• camicroscope/caMicroscope#616
• camicroscope/caMicroscope#613
• camicroscope/caMicroscope#608

Backend Service (caracal)

• Add openssl for key generation
• add segmentationCountByExecid
• add a route to echo environment variables
• change default run indexer behavior to false

Tile Server (iip image)

base container image and permission changes.

Slide Loader

base container image and dependency changes.

3.10.1

Viewer

• Bugfix for spyglass tool with token slide auth

3.10.0

Distro

• Support for Slide Token Check Option Distro/196
• Update Pathdb to 2.0.0 and Pathdb Image Loader to 3.0.0
• Github CI Distro/197

Viewer

• Result Export Page caMicroscope/566
• Slide Token injection caMicroscope/567

Backend

• Add Pathdb Token Slide Auth Handler Caracal/139
• Support using files as immediate backups for data Caracal/102
• Switch (back) to alpine container base

SlideLoader

• Simplify/refactor thumbnail script

PathDB

• Updated to PHP 8.1 and Drupal 9

3.9.11

Distro

• bugfix - lingering index lines
• kubernetes deployment option
• default post-login redir to table instead of landing

Distro Changelog: v3.9.10...v3.9.11

SlideLoader

• Thumbnail generator for existing slides
• Improved NCI Customization

SlideLoader Changelog: camicroscope/SlideLoader@v3.9.10...v3.9.11

Viewer

• add redirect page

Viewer Changelog: camicroscope/caMicroscope@v3.9.10...v3.9.11

Backend

add header-based login handler

Backend Changelog: camicroscope/Caracal@v3.9.10...v3.9.11

v3.9.10

Distro

• Add kubernetes config
• Generate jwt keys for caracal if they don't exist

Viewer

• Fix and enhance Human Readable URL support

SlideLoader

• Add a NCI Slide Utility
• Automatic Container Building camicroscope/SlideLoader#57

Backend

• Fix Preset Labels
• Automatic Container Builds #130
• Assume Indexing Responsibilities #133

3.9.9

Distro

• Upgrade mongo to 4.2-bionic

Viewer

Fix and enhance Human Readable URL support

3.9.8

Distro

• add youtube-nocookie to csp config for embed video
• add openshift config

Viewer

• Add Segmentation -> Annotation Functionality #542
• Margin and Table UI Fixes #549 #551
• Add Pathdb Quad Lookup
• Add Docs link to landing
• retry slides one time if they have an error

Backend

• disable tfjs for production reasons

Slide Loader

• Support more metadata extraction, optionally

3.9.7

Pathdb

• Update to 1.7.0

Backend

• Slide param for mark/multi bugfix