Conda Support

A binstar channel has been created for the ged lab: https://binstar.org/ged.

You can make conda aware of this channel as follows:

% conda config --add channels ged

To install khmer for use:

% conda install khmer

To set up a development environment:

% conda install khmer-deps

Then:

% cd ~/src/khmer
% make
% nosetests khmer --attr '!known_failing'

If you'd like to isolate things via a conda environment:

% conda create -n khmer-dev khmer-deps
% source activate khmer-dev
% cd ~/src/khmer
% make
% nosetests khmer --attr '!known_failing'

Once we've merged/addressed https://github.com/ged-lab/khmer/pull/555, you can sub nosetests khmer --attr '!known_failing' with make test.

To build conda packages that can be uploaded to binstar:

% conda install conda-build

Or:

% conda update conda-build

Then:

% cd ~/src/khmer/conda-recipes
% conda build khmer

This will build screed, khmer-deps and then khmer.