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28 Open 45 Closed
28 Open 45 Closed
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Issues list

non standard VCF output ?
#77 opened Sep 11, 2024 by gianfilippo
1
Need suggestion/advice regarding JACUSA pileup
#76 opened Aug 7, 2024 by aayushraman
2
JACUJA2 Code Example Request
#73 opened Jun 20, 2024 by Chan-W00
3
GT field of the VCF output
#72 opened Apr 10, 2024 by tszkwanyau
@piechottam
1
Again pCalc error bug
#71 opened Feb 20, 2024 by H1889
@piechottam
Understanding/filtering RRD jacusa2 output
#70 opened Feb 12, 2024 by CelineLabbeCurie
1
How to appropriately interpret & utilize strand information in call-1
#69 opened Jan 16, 2024 by Sfeng666
1
How do general filterings on MQ, BQ and coverage work together?
#68 opened Jan 15, 2024 by Sfeng666
1
What is the best practice to prepare input bam files for calling RNA editing ?
#66 opened Feb 7, 2023 by YibiChen
Problems writing file with multithreading
#65 opened Jan 19, 2023 by Izar-de-villasante
@piechottam
1
complains about "the output is not to a file" with -r variable specified: bug
#64 opened Jan 17, 2023 by Izar-de-villasante
@piechottam
Unknown output format: /
#63 opened Jan 13, 2023 by CelineLabbeCurie
5
feature request - read start and end rate reporting in pileup enhancement
#59 opened Oct 2, 2022 by joegeorgeson
@piechottam
1
paired-end pileup with annotation file - question question
#58 opened Sep 14, 2022 by joegeorgeson
4
java issue with v2.0.1 bug
#57 opened Sep 11, 2022 by joegeorgeson
@piechottam
4
RNA-seq and DNA-seq data were mapped to different reference genome
#56 opened Sep 6, 2022 by YiweiNiu
7
chi square test for likelihood ratio?
#54 opened Apr 21, 2022 by fishercera
2
Download the latest release with Linux cmd line
#51 opened Feb 2, 2022 by AminaLEM
filtering artifacts using -a E:filename
#50 opened Nov 1, 2021 by BreenMS
@piechottam
2
Number of modifications halfed in JACUSA 2.0 vs. 1.3 (mode call-2)
#47 opened Aug 26, 2021 by ckuenne
8
-B A2G output format explanation
#46 opened Aug 23, 2021 by ckuenne
2
JACUSA_to_TRIBE.pl obsolete?
#45 opened Aug 16, 2021 by ckuenne
@piechottam
3
Pipeup exception
#44 opened Aug 10, 2021 by shuzhouliu
-v VCF (copied from JACUSA1 - issues)
#39 opened Jul 15, 2021 by piechottam
2
The jacusa2 result lost the last base(amplicon data)
#38 opened Jul 6, 2021 by elaine-bio
1
ProTip! Follow long discussions with comments:>50.