deploy for 1.0 release

dieterich-lab · Dec 21, 2023 · ef7ef25 · ef7ef25
1 parent 38e2f2f
commit ef7ef25
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Showing 3 changed files with 5 additions and 2 deletions.
diff --git a/.gitignore b/.gitignore
@@ -5,5 +5,5 @@
 .DS_Store
 .Renviron
 passwords.txt
-R/other/
+R/other/*.R
 *.RDS
diff --git a/R/write_db_tables.R b/R/write_db_tables.R
@@ -109,7 +109,10 @@ populate_db <- function() {
     select(-starts_with("log2fold_"))
   dte <- dte %>% rename(contrasts = contrast)
 
-  db[["dte"]] <- dte
+  db[["dte"]] <- dte %>%
+    group_by(contrasts) %>%
+    mutate(padj = p.adjust(pvalue, method = "BH")) %>%
+    ungroup()
 
   dge <- readRDS(file.path(base_path, "dge_results.RDS")) %>%
     rename(contrasts = contrast)

diff --git a/database.RDS b/database.RDS