Merge branch 'master' of github.com:elixir-europe/rdmkit into contrib…

…ute-refactor

_config.yml

@@ -4,7 +4,7 @@ title: RDMkit
 description: "Best practices and guidelines you can use for FAIR management of your research data."
 # Metadata description of the website
 
-remote_theme: ELIXIR-Belgium/elixir-toolkit-theme@3.0.0
+remote_theme: ELIXIR-Belgium/elixir-toolkit-theme@3.1.1
 
 sass:
   style: compressed

_sass/_bootstrap_variables.scss

@@ -31,6 +31,3 @@ $h3-font-size: 1rem * 1.5;
 $h4-font-size: 1rem * 1.1;
 $h5-font-size: 1rem;
 $h6-font-size: 1rem;
-$custom-container-max-widths: (
-    xxxl: 1700px
-);

_sass/_custom_classes.scss

@@ -181,29 +181,6 @@ section#search-section {
     }
 }
 
-/*-----Accordion styles-----*/
-
-// Add a bottom border to the last accordion.
-a.info-collapse[aria-expanded="false"]:last-of-type,
-a.info-collapse[aria-expanded="true"]:last-of-type + .show {
-    border-bottom: 1px solid $border-color;
-}
-
-// Remove border hover effect.
-.info-collapse:hover,
-.info-collapse[aria-expanded="true"] {
-    border-color: $border-color !important;
-}
-
-// Add hover effect to accordion header text.
-a.info-collapse h3 {
-    transition: color 0.2s ease-in-out;
-}
-
-a.info-collapse:hover h3 {
-    color: rgba($link-color, 0.8) !important;
-}
-
 /*-----Better tools-----*/
 .tool {
     border-radius: 1rem;

index.html

@@ -184,7 +184,7 @@ <h2 class="mb-3">RDMkit in numbers</h2>
         </section>
     </div>
     {%- if site.theme_variables.back_to_top or site.theme_variables.back_to_top == nil %}
-    <button id="back-to-top" class="btn btn-primary" type="button" aria-hidden="true" onclick="topFunction()">
+    <button id="back-to-top" class="btn btn-primary btn-sm rounded-pill" type="button" aria-hidden="true" onclick="topFunction()">
         <i class="fa-solid fa-arrow-up"></i>
     </button>
     {%- endif %}

pages/national_resources/ch_resources.md

@@ -92,7 +92,7 @@ national_resources:
     how_to_access:
     instance_of:
     related_pages:
-      tool_assembly: [covid-19]
+      tool_assembly: [covid19_data_portal]
       your_domain: []
       your_role: []
       your_tasks: [existing_data]

pages/national_resources/lu_resources.md

@@ -47,7 +47,7 @@ national_resources:
   - name: Luxembourg Covid-19 data portal
     description: The Luxembourgish COVID-19 Data Portal acts as a collection of links and provides information to support researchers to utilise Luxembourgish and European infrastructures for data sharing.  
     related_pages:
-      tool_assembly: [Covid-19]
+      tool_assembly: [covid19_data_portal]
       your_domain: [human data]
       your_tasks: [sensitive, existing data, data publication]
     url: https://covid19dataportal.lu/

pages/national_resources/no_resources.md

@@ -55,7 +55,7 @@ national_resources:
     related_pages:
       your_domain: [human_data]
       your_tasks: [sensitive, existing_data, data_publication]
-      tool_assembly: [covid-19_data_portal]
+      tool_assembly: [covid19_data_portal]
     url: https://covid19dataportal.no/
   - name: Federated EGA Norway node
     description: Federated instance collects metadata of -omics data collections stored in national or regional archives and makes them available for search through the main EGA portal. With this solution, sensitive data will not physically leave the country, but will reside on TSD.

pages/national_resources/se_resources.md

@@ -37,7 +37,7 @@ national_resources:
   - name: Swedish Pathogens Portal
     description: The Swedish Pathogens Portal provides information, guidelines, tools and services to support researchers to utilise Swedish and European infrastructures for data sharing.
     related_pages:
-      tool_assembly: [covid-19]
+      tool_assembly: [covid19_data_portal]
       your_domain: [human_data]
       your_tasks: [sensitive, existing_data, data_publication]
     url: https://pathogens.se/ 

pages/tool_assembly/covid19_data_portal.md

@@ -1,7 +1,7 @@
 ---
 title: COVID-19 Data Portal 
 contributors: [Guy Cochrane, Marianna Ventouratou, Nadim Rahman, Sam Holt]
-page_id: covid-19
+page_id: covid19_data_portal
 affiliations: [ELIXIR CONVERGE]
 related_pages:
   your_tasks: [sensitive, existing_data, data_publication, data_analysis]

pages/your_domain/human_data.md

@@ -5,7 +5,7 @@ contributors: [Niclas Jareborg, Nirupama Benis, Ana Portugal Melo, Pinar Alper,
 page_id: human_data
 related_pages:
   your_tasks: [sensitive, gdpr_compliance]
-  tool_assembly: [tsd, covid-19, transmed, fairtracks]
+  tool_assembly: [tsd, covid19_data_portal, transmed, fairtracks]
 training:
   - name: Training in TeSS
     registry: TeSS

pages/your_tasks/data_sensitivity.md

@@ -5,7 +5,7 @@ description: How to identify the sensitivity of different research data types
 page_id: sensitive
 redirect_from: sensitive_data
 related_pages: 
-  tool_assembly: [tsd, covid-19, transmed]
+  tool_assembly: [tsd, covid19_data_portal, transmed]
 training:
   - name: Training in TeSS
     registry: TeSS

pages/your_tasks/ethics.md

@@ -4,7 +4,7 @@ contributors: [Karel Berka , Erin Calhoun, Paulette Lieby, Anamika Chatterjee, K
 description: Working on aspects in the management of research data that can raise ethical issues
 page_id: ethics
 related_pages:
-  tool_assembly: [covid-19, transmed, tsd, csc]
+  tool_assembly: [covid19_data_portal, transmed, tsd, csc]
 training:
 - name: 'Learning material on ethics in RDM'
   registry: TeSS