Update README.md #52
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| name: linux | |
| on: | |
| pull_request: | |
| branches: [ main ] | |
| push: | |
| branches: [ main ] | |
| paths-ignore: | |
| - '**.md' | |
| - '**.txt' | |
| - 'docs/**' | |
| # Allows to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| jobs: | |
| vol-pdc: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 60 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup | |
| run: | | |
| voldir="$PWD" | |
| voldirbase="$(basename $(pwd))" | |
| cd .. | |
| mkdir vol-pdc-workspace | |
| cd vol-pdc-workspace | |
| workspace="$PWD" | |
| mv $voldir $workspace | |
| cd .. | |
| mv ./vol-pdc-workspace ./vol-pdc | |
| cd vol-pdc/vol-pdc | |
| export VOL_DIR="$PWD" | |
| cd .. | |
| - name: Dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libtool | |
| sudo apt install cmake | |
| # hdf5 | |
| git clone https://github.com/HDFGroup/hdf5.git | |
| # libfabric 1.12.1 | |
| wget https://github.com/ofiwg/libfabric/archive/refs/tags/v1.12.1.tar.gz | |
| tar xf v1.12.1.tar.gz | |
| # mercury | |
| git clone https://github.com/mercury-hpc/mercury.git --recursive | |
| # mpi | |
| sudo apt-get install libopenmpi-dev | |
| # zlib | |
| # sudo apt-get install zlib1g-dev | |
| # python3 | |
| sudo apt-get install python3 | |
| # pdc | |
| git clone https://github.com/hpc-io/pdc.git | |
| - name: Installation | |
| run: | | |
| mydir="$PWD" | |
| export HDF5_DIR=$mydir/hdf5/install | |
| export HDF5_INCLUDE_DIR=$mydir/hdf5/install/include | |
| export HDF5_LIBRARY=$mydir/hdf5/install/lib/libhdf5.so | |
| export VOL_DIR=$mydir/vol-pdc | |
| export MERCURY_DIR=$mydir/mercury/install | |
| export LIBFABRIC_DIR=$mydir/libfabric-1.12.1/install | |
| export PDC_DIR=$mydir/pdc/install | |
| export LD_LIBRARY_PATH="$LIBFABRIC_DIR/lib:$MERCURY_DIR/lib:$PDC_DIR/lib:$VOL_DIR/install/lib:$LD_LIBRARY_PATH" | |
| export PATH="$LIBFABRIC_DIR/include:$LIBFABRIC_DIR/lib:$MERCURY_DIR/include:$MERCURY_DIR/lib:$PATH" | |
| # Compile HDF5 | |
| mkdir $HDF5_DIR | |
| cd hdf5 | |
| git checkout hdf5-1_14_1-2 | |
| export HDF5_LIBTOOL=/usr/bin/libtoolize | |
| ./autogen.sh | |
| ./configure CC=mpicc --prefix=$HDF5_DIR --enable-parallel --disable-tests --disable-hl --disable-fortran | |
| make -j2 && make install | |
| # Compile libfabric | |
| mkdir $LIBFABRIC_DIR | |
| cd $LIBFABRIC_DIR | |
| cd .. | |
| ./autogen.sh | |
| ./configure --disable-usnic --disable-mrail --disable-rstream --disable-perf --disable-efa --disable-psm2 --disable-psm --disable-verbs --disable-shm --disable-static --disable-silent-rules | |
| make -j2 && sudo make install | |
| make check | |
| # Compile Mercury | |
| mkdir $MERCURY_DIR | |
| cd $MERCURY_DIR | |
| git checkout v2.1.0 | |
| cmake ../ -DCMAKE_C_COMPILER=gcc -DBUILD_SHARED_LIBS=ON -DBUILD_TESTING=ON -DNA_USE_OFI=ON -DNA_USE_SM=OFF -DMERCURY_USE_CHECKSUMS=OFF | |
| make -j2 && sudo make install | |
| ctest | |
| # Compile PDC | |
| mkdir $PDC_DIR | |
| cd $PDC_DIR | |
| git checkout develop | |
| cmake ../ -DBUILD_MPI_TESTING=ON -DBUILD_SHARED_LIBS=ON -DBUILD_TESTING=ON -DCMAKE_INSTALL_PREFIX=$PDC_DIR -DPDC_ENABLE_MPI=ON -DMERCURY_DIR=$MERCURY_DIR -DCMAKE_C_COMPILER=mpicc | |
| make -j2 && sudo make install | |
| # Compile VOL-PDC | |
| cd $VOL_DIR | |
| mkdir build | |
| cd build | |
| cmake ../ -DCMAKE_INSTALL_PREFIX=$VOL_DIR/install -DHDF5_INCLUDE_DIR=$HDF5_INCLUDE_DIR -DHDF5_LIBRARY=$HDF5_LIBRARY -DBUILD_SHARED_LIBS=ON -DHDF5_DIR=$HDF5_DIR -DPDC_DIR=$PDC_DIR/share/cmake/pdc -DBUILD_EXAMPLES=ON | |
| make && sudo make install | |
| export HDF5_PLUGIN_PATH=$VOL_DIR/install/lib | |
| export HDF5_VOL_CONNECTOR="pdc under_vol=0;under_info={}" | |
| export LD_PRELOAD=$VOL_DIR/install/lib/libhdf5_vol_pdc.so | |
| # Run test | |
| mpirun -N 1 -n 1 -c 1 $PDC_DIR/bin/pdc_server.exe & | |
| mpirun -N 1 -n 1 -c 1 ./bin/h5pdc_vpicio test | |
| mpirun -N 1 -n 1 -c 1 $PDC_DIR/bin/close_server | |
| - name: Setup tmate session | |
| if: ${{ failure() }} | |
| uses: mxschmitt/action-tmate@v3 |