Add reference as sample, and include reference sequence in ts #48

	name: CI

	on:
	pull_request:
	push:
	branches:
	- main

	jobs:
	# pre-commit:
	# name: Lint
	# runs-on: ubuntu-latest
	# steps:
	# - uses: actions/checkout@v4
	# - uses: actions/setup-python@v5
	# with:
	# python-version: '3.11'
	# - uses: pre-commit/[email protected]
	test:
	name: Test
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: '3.11'
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	python -m pip install '.[dev,analysis]'

	- name: Run tests
	run: \|
	pytest --cov=sc2ts
	# - name: Upload coverage to Coveralls
	# uses: coverallsapp/[email protected]
	# with:
	# github-token: ${{ secrets.GITHUB_TOKEN }}
	# # The first coveralls upload will succeed and others seem to fail now.
	# # This is a quick workaround for doing a proper "parallel" setup:
	# # https://github.com/coverallsapp/github-action
	# fail-on-error: false

	packaging:
	name: Packaging
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: actions/setup-python@v5
	with:
	python-version: '3.11'
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	python -m pip install build twine validate-pyproject[all]
	- name: Check and install package
	run: \|
	validate-pyproject pyproject.toml
	python -m build
	python -m twine check --strict dist/*
	python -m pip install dist/*.whl

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