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Releases: maize-genetics/rPHG

v0.2.0

11 Oct 13:55
21ff612
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  • Unified workflow for both local and server instances
  • Added new class, PHGServerCon
    • New object for connecting to remote public PHG servers using BrAPI
      endpoints
  • Added new class, PHGLocalCon
    • New object for connecting to local SQLite or PostgreSQL database
      instances
  • Added new class, HaplotypeGraph
    • Wrapper for PHG API Java graph object
  • Prior objects now use method dispatch for singular set of methods to return
    relevant PHG data:
    • PHGMethod()
    • showPHGMethods()
    • readSamples()
    • readRefRanges()
    • readHaplotypeIds()
    • readPHGDataSet()
  • Updated summary methods:
    • numHaploPerRefRange()
    • calcMutualInfo()
    • plotGraph()
    • plotMutualInfo()

v0.1.18

22 Sep 12:10
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  • Modified availablePHGMethods():
    • Now returns only method IDs for graphs with more than 100 samples in the
      data
    • This prevents publicly available testing methods to be displayed for
      new PHG users.