7 readqc not always specifying the correct output file #8
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aclum
reviewed
Aug 16, 2024
interleave_rqcfilter.wdl
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| @@ -190,7 +190,7 @@ task rqcfilter{ | |||
| File stat = filename_stat | |||
| File stat2 = filename_stat2 | |||
| File info_file = filename_reproduce | |||
| File filtered = glob("filtered/*fastq.gz")[0] | |||
| File filtered = glob("filtered/*.anqrpht.fastq.gz")[0] | |||
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This does work but it would be better to remove the glob. We are only expecting a single file so there is no need for the glob.
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specified anqrpht.fastq.gz suffix