Data QC: workflow_execution_has_input_data_objects

[mbthornton-lbl]

15 mags_activity_set

{
            "_id" : ObjectId("649b0052ec087f6bbab34903"),
            "id" : "nmdc:wfmag-11-t8gc3c64.1",
            "has_input" : "nmdc:dobj-11-y2f0gn35"
        },
        {
            "_id" : ObjectId("649b0052ec087f6bbab34903"),
            "id" : "nmdc:wfmag-11-t8gc3c64.1",
            "has_input" : "nmdc:dobj-11-achfhn33"
        },
        {
            "_id" : ObjectId("649b0052ec087f6bbab34903"),
            "id" : "nmdc:wfmag-11-t8gc3c64.1",
            "has_input" : "nmdc:dobj-11-vt4jr220"
        },
        {
            "_id" : ObjectId("649b0052ec087f6bbab34907"),
            "id" : "nmdc:wfmag-11-0gwm7d87.1",
            "has_input" : "nmdc:dobj-11-9a9pn310"
        },
        {
            "_id" : ObjectId("649b0052ec087f6bbab34907"),
            "id" : "nmdc:wfmag-11-0gwm7d87.1",
            "has_input" : "nmdc:dobj-11-dpnhb305"
        },
        {
            "_id" : ObjectId("649b0052ec087f6bbab34907"),
            "id" : "nmdc:wfmag-11-0gwm7d87.1",
            "has_input" : "nmdc:dobj-11-1fkqcg08"
        },
        {
            "_id" : ObjectId("649b0052ec087f6bbab34941"),
            "id" : "nmdc:wfmag-11-dchy6q29.1",
            "has_input" : "nmdc:dobj-11-1wzar939"
        },
        {
            "_id" : ObjectId("649b0052ec087f6bbab34941"),
            "id" : "nmdc:wfmag-11-dchy6q29.1",
            "has_input" : "nmdc:dobj-11-fg28a080"
        },
        {
            "_id" : ObjectId("649b0052ec087f6bbab34941"),
            "id" : "nmdc:wfmag-11-dchy6q29.1",
            "has_input" : "nmdc:dobj-11-s4hp2x64"
        },
        {
            "_id" : ObjectId("649b0052ec087f6bbab34942"),
            "id" : "nmdc:wfmag-11-8s9xk838.1",
            "has_input" : "nmdc:dobj-11-kr8ev105"
        },
        {
            "_id" : ObjectId("649b0052ec087f6bbab34942"),
            "id" : "nmdc:wfmag-11-8s9xk838.1",
            "has_input" : "nmdc:dobj-11-gxgpbv06"
        },
        {
            "_id" : ObjectId("649b0052ec087f6bbab34942"),
            "id" : "nmdc:wfmag-11-8s9xk838.1",
            "has_input" : "nmdc:dobj-11-whq9ph06"
        },
        {
            "_id" : ObjectId("649b0054ec087f6bbab34a76"),
            "id" : "nmdc:wfmag-11-29carm07.1",
            "has_input" : "nmdc:dobj-11-t0wzq938"
        },
        {
            "_id" : ObjectId("649b0054ec087f6bbab34a76"),
            "id" : "nmdc:wfmag-11-29carm07.1",
            "has_input" : "nmdc:dobj-11-cvcxxr53"
        },
        {
            "_id" : ObjectId("649b0054ec087f6bbab34a76"),
            "id" : "nmdc:wfmag-11-29carm07.1",
            "has_input" : "nmdc:dobj-11-qkzjq615"
        }

7 metagenome_assembly_set

{
            "_id" : ObjectId("649b005f2ca5ee4adb13a1a0"),
            "id" : "nmdc:wfmgas-11-k8x7bf78.1",
            "has_input" : "nmdc:dobj-11-6appe696"
        },
        {
            "_id" : ObjectId("649b005f2ca5ee4adb13a1df"),
            "id" : "nmdc:wfmgas-11-r8dyz821.1",
            "has_input" : "nmdc:dobj-11-xbb2mp07"
        },
        {
            "_id" : ObjectId("649b005f2ca5ee4adb13a1e2"),
            "id" : "nmdc:wfmgas-11-6pbs6265.1",
            "has_input" : "nmdc:dobj-11-axnsyw61"
        },
        {
            "_id" : ObjectId("649b005f2ca5ee4adb13a29d"),
            "id" : "nmdc:wfmgas-11-yh8n1e65.1",
            "has_input" : "nmdc:dobj-11-nz4neg35"
        },
        {
            "_id" : ObjectId("649b005f2ca5ee4adb13a302"),
            "id" : "nmdc:wfmgas-11-kk38rr46.1",
            "has_input" : "nmdc:dobj-11-aetz2k16"
        },
        {
            "_id" : ObjectId("649b005f2ca5ee4adb13a306"),
            "id" : "nmdc:wfmgas-11-10vezr29.1",
            "has_input" : "nmdc:dobj-11-h673kw16"
        }

5 metagenome_annotation_activity_set

{
            "_id" : ObjectId("649b005bbf2caae0415efba8"),
            "id" : "nmdc:wfmgan-11-c516q834.1",
            "has_input" : "nmdc:dobj-11-dpnhb305"
        },
        {
            "_id" : ObjectId("649b005bbf2caae0415efba9"),
            "id" : "nmdc:wfmgan-11-yzp9eq74.1",
            "has_input" : "nmdc:dobj-11-achfhn33"
        },
        {
            "_id" : ObjectId("649b005bbf2caae0415efbef"),
            "id" : "nmdc:wfmgan-11-fmymf551.1",
            "has_input" : "nmdc:dobj-11-fg28a080"
        },
        {
            "_id" : ObjectId("649b005bbf2caae0415efbf0"),
            "id" : "nmdc:wfmgan-11-3nkefn97.1",
            "has_input" : "nmdc:dobj-11-gxgpbv06"
        },
        {
            "_id" : ObjectId("649b005dbf2caae0415efd26"),
            "id" : "nmdc:wfmgan-11-w1d6gy98.1",
            "has_input" : "nmdc:dobj-11-cvcxxr53"
        }

1 metatranscriptome_activity_set

{
            "_id" : ObjectId("65affcdc07a1abea27b3fa1f"),
            "id" : "nmdc:wfmt-11-y9cf0x90.1",
            "has_input" : "nmdc:dobj-11-xwqq5x15"
        }

6 read_based_taxonomy_analysis_set

        {
            "_id" : ObjectId("649b009bff710ae353f8ccdc"),
            "id" : "nmdc:wfrbt-12-zfccjh43.1",
            "has_input" : "nmdc:dobj-11-6bdffd27"
        },
        {
            "_id" : ObjectId("649b009bff710ae353f8cd18"),
            "id" : "nmdc:wfrbt-12-3qany071.1",
            "has_input" : "nmdc:dobj-11-xbb2mp07"
        },
        {
            "_id" : ObjectId("649b009bff710ae353f8cd1f"),
            "id" : "nmdc:wfrbt-12-5p0p4731.1",
            "has_input" : "nmdc:dobj-11-6appe696"
        },
        {
            "_id" : ObjectId("649b009bff710ae353f8cd25"),
            "id" : "nmdc:wfrbt-12-arwnpf44.1",
            "has_input" : "nmdc:dobj-11-axnsyw61"
        },
        {
            "_id" : ObjectId("649b009cff710ae353f8d16e"),
            "id" : "nmdc:wfrbt-11-dkzdrn42.1",
            "has_input" : "nmdc:dobj-11-nz4neg35"
        },
        {
            "_id" : ObjectId("649b009cff710ae353f8d1cf"),
            "id" : "nmdc:wfrbt-11-z5a29n65.1",
            "has_input" : "nmdc:dobj-11-aetz2k16"
        }

[aclum]

Not a blocker. None of these are for studies we are re-iding, most are from ingesting records from JGI. We can look at this once re-iding is complete.

[aclum]

we should be able to use nmdc_automation/run_process/run_workflows.py to generate records for these.
these were all from GROW and Bioscales which are still on the file systems
/global/cfs/cdirs/m3408/aim2/dev/bioscales_mapping/grow_analysis_projects/ and /global/cfs/cdirs/m3408/aim2/dev/bioscales_mapping/bioscales_analysis_projects/