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automation support for long read assembly #82

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aclum opened this issue Mar 29, 2024 · 0 comments
Open

automation support for long read assembly #82

aclum opened this issue Mar 29, 2024 · 0 comments
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@scanon @kaijli @vlilanl

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@aclum
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aclum commented Mar 29, 2024

There have been changes to support long read workflows. A new wdl, choose_assembly.wdl, with a boolean value for if the short or long read workflow should run is in development. Once this is merged into main with a tagged release the automation code should be updated to call this wdl with the new input requirements.

Depends on microbiomedata/issues#454

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@scanon scanon

@kaijli kaijli

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@scanon @aclum @kaijli @vlilanl