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Create FHIR Extractor #2

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  • Create an extract script that works with FHIR bulk data
  • Extract common code for reporting and cleaning to a module

@eedrummer
WIP: Starting to extract from ndjson
42c4475
@eedrummer
Moving cleaning and reporting functions into a module
bd028dd 
Refactored db and FHIR extract to use the common code
More implementation of the FHIR extract
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