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Feat/nf tests #309

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✨ nf-tests

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@sateeshperi sateeshperi self-assigned this Jun 19, 2023
@sateeshperi sateeshperi marked this pull request as draft June 19, 2023 20:38
@sateeshperi sateeshperi added the enhancement Improvement for existing functionality label Jun 19, 2023
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github-actions bot commented Jun 19, 2023 •
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nf-core lint overall result: Failed ❌

Posted for pipeline commit ec28e57

+| ✅ 155 tests passed       |+
#| ❔   2 tests were ignored |#
!| ❗   2 tests had warnings |!
-| ❌   5 tests failed       |-

❌ Test failures:

  • files_unchanged - .github/CONTRIBUTING.md does not match the template
  • files_unchanged - .github/PULL_REQUEST_TEMPLATE.md does not match the template
  • files_unchanged - .github/workflows/linting.yml does not match the template
  • files_unchanged - lib/NfcoreTemplate.groovy does not match the template
  • multiqc_config - 'assets/multiqc_config.yml' does not contain a matching 'report_comment'.
    The expected comment is:
    This report has been generated by the <a href="https://github.com/nf-core/taxprofiler/tree/dev" target="_blank">nf-core/taxprofiler</a> analysis pipeline. For information about how to interpret these results, please see the <a href="https://nf-co.re/taxprofiler/dev/docs/output" target="_blank">documentation</a>.
    The current comment is:
    This report has been generated by the <a href="https://github.com/nf-core/taxprofiler/releases/tag/dev" target="_blank">nf-core/taxprofiler</a> analysis pipeline. For information about how to interpret these results, please see the <a href="https://nf-co.re/taxprofiler/dev/docs/output" target="_blank">documentation</a>.

❗ Test warnings:

  • pipeline_todos - TODO string in main.nf: Remove this line if you don't need a FASTA file
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.11.1
  • Run at 2024-01-12 05:41:31

sateeshperi
sateeshperi commented Jun 22, 2023
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@sateeshperi sateeshperi marked this pull request as ready for review June 26, 2023 20:51
@jfy133 jfy133 mentioned this pull request Jun 29, 2023
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@jfy133 jfy133 changed the base branch from dev to bouncy-basenji November 13, 2023 11:02
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jfy133 commented Nov 13, 2023

@nf-core-bot fix linting

Base automatically changed from bouncy-basenji to dev September 11, 2024 05:56
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Labels
enhancement Improvement for existing functionality
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Hackathon: November 2023
Status: In progress
nf-test Migration
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