Skip to content

v2.8.0 - Major release
Compare
Choose a tag to compare
@nservant nservant released this 27 Jan 08:45
· 350 commits to master since this release
v2.8.0
aa5a7ef

CHANGES IN VERSION 2.8.0

NEW FEATURES
o Return bias vector after IC normalization

o New utils hicpro2fithic.py to convert HiC-Pro output into fitHiC input

SIGNIFICANT USER-VISIBLE CHANGES
o Update iced version (-> 0.4.0). This version includes a major changes on matrix filtering before iced normalization

o sparseToDense.py utils. Create output file in the current folder by default

BUG FIXES

o Fix bug in the help message of digest_genome.py

CHANGES IN VERSION 2.7.9

NEW FEATURES
o Update for capture Hi-C. New variable CAPTURE_TARGET allowing to restrict the analysis to the captured region(s)

SIGNIFICANT USER-VISIBLE CHANGES
o Update iced version (-> 0.3.0)

o Exit with an error if the restriction fragment file is set but not found. In the previous version, HiC-Pro automatically switched to DNAse mode.

o Optimisation of python scripts

Assets 2
Loading