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v2.9.0 - Major release
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@nservant nservant released this 20 Jun 09:47
· 324 commits to master since this release
v2.9.0
2d15209

CHANGES IN VERSION 2.9.0

NEW FEATURES

o update iced_0.4.2

SIGNIFICANT USER-VISIBLE CHANGES

o Fix issues with floating values in hicpro2fithic.py (F. Ay)
o Update hicpro2fithic.py script. New '-r' option to set up the data resolution (F. Ay)
o samtools >1.0 is now required
o The -s build_contact_maps option now directly creates matrix files from .allValidPairs file. It does not merge the .validPairs anymore. Please use -s merge_persample to merge .validPairs files and remove duplicates.
o Update manual and correct errors

BUG FIXES

o Fix bug for SLURM support
o Fix python path in merge_valid_interaction.sh
o Fix bug in hicpro2juicebox when chromosome names have "_"
o Fix a bug in detection of religation events
o Fix some issue with sort -T. This option is no longer used and replaced by setting the TMPDIR variable

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