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CL release v2024-09-26 (#2619)
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@Caroline-99
Caroline-99 authored Sep 26, 2024
1 parent 2154d3d commit 3589fcf
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Showing 38 changed files with 29,267 additions and 16,156 deletions.
4,391 changes: 4,051 additions & 340 deletions cl-base.owl
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4,909 changes: 3,985 additions & 924 deletions cl.obo
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461 changes: 459 additions & 2 deletions patterns/definitions.owl
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6 changes: 6 additions & 0 deletions patterns/pattern.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -32,6 +32,7 @@ Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002162>))
Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002215>))
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000115>))
Declaration(AnnotationProperty(<http://purl.org/dc/terms/date>))
Declaration(AnnotationProperty(<http://purl.org/dc/terms/description>))
Declaration(AnnotationProperty(<http://purl.org/dc/terms/title>))
Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#hasDbXref>))
Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym>))
Expand Down Expand Up @@ -89,4 +90,9 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/cl/taxonSpecific>
EquivalentClasses(<http://purl.obolibrary.org/obo/cl/taxonSpecific> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CL_0000000> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002162> <http://purl.obolibrary.org/obo/NCBITaxon_1>)))


AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "xsd:string"^^xsd:string) <http://purl.org/dc/terms/description> <http://purl.obolibrary.org/obo/cl/ExtendedDescription> "This extended description was generated by ChatGPT and reviewed by the CellGuide team, who added references, and by the CL editors, who approved it for inclusion in CL. It may contain information that applies to only to some subtypes and species, and so should not be considered definitional.

xsd:string"^^xsd:string)
AnnotationAssertion(<http://purl.org/dc/terms/title> <http://purl.obolibrary.org/obo/cl/ExtendedDescription> "ExtendedDescription"^^xsd:string)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/cl/ExtendedDescription> "https://cellxgene.cziscience.com/cellguide/xsd:string"^^xsd:string)
)
8,743 changes: 2,849 additions & 5,894 deletions src/ontology/reports/cl-base-diff.md
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23 changes: 11 additions & 12 deletions src/ontology/reports/cl-edit.owl-obo-report.tsv
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Original file line number Diff line number Diff line change
@@ -1,15 +1,12 @@
Level Rule Name Subject Property Value
WARN duplicate_scoped_synonym CL:4023064 oboInOwl:hasExactSynonym CGE interneuron
WARN duplicate_scoped_synonym CL:4023064 oboInOwl:hasRelatedSynonym CGE interneuron
WARN duplicate_label_synonym CL:1000347 oboInOwl:hasExactSynonym colonocyte
WARN missing_definition CL:0000028 IAO:0000115
WARN missing_definition CL:0000030 IAO:0000115
WARN missing_definition CL:0000036 IAO:0000115
WARN missing_definition CL:0000054 IAO:0000115
WARN missing_definition CL:0000069 IAO:0000115
WARN missing_definition CL:0000072 IAO:0000115
WARN missing_definition CL:0000076 IAO:0000115
WARN missing_definition CL:0000078 IAO:0000115
WARN missing_definition CL:0000079 IAO:0000115
WARN missing_definition CL:0000095 IAO:0000115
WARN missing_definition CL:0000102 IAO:0000115
WARN missing_definition CL:0000109 IAO:0000115
Expand All @@ -28,8 +25,6 @@ WARN missing_definition CL:0000208 IAO:0000115
WARN missing_definition CL:0000217 IAO:0000115
WARN missing_definition CL:0000237 IAO:0000115
WARN missing_definition CL:0000238 IAO:0000115
WARN missing_definition CL:0000240 IAO:0000115
WARN missing_definition CL:0000241 IAO:0000115
WARN missing_definition CL:0000246 IAO:0000115
WARN missing_definition CL:0000249 IAO:0000115
WARN missing_definition CL:0000251 IAO:0000115
Expand Down Expand Up @@ -64,7 +59,6 @@ WARN missing_definition CL:0000406 IAO:0000115
WARN missing_definition CL:0000410 IAO:0000115
WARN missing_definition CL:0000416 IAO:0000115
WARN missing_definition CL:0000417 IAO:0000115
WARN missing_definition CL:0000420 IAO:0000115
WARN missing_definition CL:0000423 IAO:0000115
WARN missing_definition CL:0000428 IAO:0000115
WARN missing_definition CL:0000435 IAO:0000115
Expand Down Expand Up @@ -160,6 +154,7 @@ INFO missing_superclass CL:0000020 rdfs:subClassOf
INFO missing_superclass CL:0000048 rdfs:subClassOf
INFO missing_superclass CL:0000064 rdfs:subClassOf
INFO missing_superclass CL:0000067 rdfs:subClassOf
INFO missing_superclass CL:0000076 rdfs:subClassOf
INFO missing_superclass CL:0000080 rdfs:subClassOf
INFO missing_superclass CL:0000082 rdfs:subClassOf
INFO missing_superclass CL:0000103 rdfs:subClassOf
Expand Down Expand Up @@ -192,8 +187,10 @@ INFO missing_superclass CL:0000225 rdfs:subClassOf
INFO missing_superclass CL:0000226 rdfs:subClassOf
INFO missing_superclass CL:0000227 rdfs:subClassOf
INFO missing_superclass CL:0000228 rdfs:subClassOf
INFO missing_superclass CL:0000240 rdfs:subClassOf
INFO missing_superclass CL:0000255 rdfs:subClassOf
INFO missing_superclass CL:0000295 rdfs:subClassOf
INFO missing_superclass CL:0000322 rdfs:subClassOf
INFO missing_superclass CL:0000329 rdfs:subClassOf
INFO missing_superclass CL:0000349 rdfs:subClassOf
INFO missing_superclass CL:0000350 rdfs:subClassOf
Expand Down Expand Up @@ -279,7 +276,6 @@ INFO missing_superclass CL:0002343 rdfs:subClassOf
INFO missing_superclass CL:0002344 rdfs:subClassOf
INFO missing_superclass CL:0002346 rdfs:subClassOf
INFO missing_superclass CL:0002366 rdfs:subClassOf
INFO missing_superclass CL:0002372 rdfs:subClassOf
INFO missing_superclass CL:0002374 rdfs:subClassOf
INFO missing_superclass CL:0002426 rdfs:subClassOf
INFO missing_superclass CL:0002438 rdfs:subClassOf
Expand Down Expand Up @@ -319,6 +315,7 @@ INFO missing_superclass CL:0003001 rdfs:subClassOf
INFO missing_superclass CL:0004246 rdfs:subClassOf
INFO missing_superclass CL:0004247 rdfs:subClassOf
INFO missing_superclass CL:0004250 rdfs:subClassOf
INFO missing_superclass CL:0005012 rdfs:subClassOf
INFO missing_superclass CL:0005018 rdfs:subClassOf
INFO missing_superclass CL:0005023 rdfs:subClassOf
INFO missing_superclass CL:0008003 rdfs:subClassOf
Expand Down Expand Up @@ -407,7 +404,6 @@ INFO missing_superclass CL:0009102 rdfs:subClassOf
INFO missing_superclass CL:0009115 rdfs:subClassOf
INFO missing_superclass CL:0010001 rdfs:subClassOf
INFO missing_superclass CL:0010002 rdfs:subClassOf
INFO missing_superclass CL:0010003 rdfs:subClassOf
INFO missing_superclass CL:0010004 rdfs:subClassOf
INFO missing_superclass CL:0010005 rdfs:subClassOf
INFO missing_superclass CL:0010006 rdfs:subClassOf
Expand Down Expand Up @@ -461,6 +457,7 @@ INFO missing_superclass CL:1000222 rdfs:subClassOf
INFO missing_superclass CL:1000236 rdfs:subClassOf
INFO missing_superclass CL:1000239 rdfs:subClassOf
INFO missing_superclass CL:1000245 rdfs:subClassOf
INFO missing_superclass CL:1000271 rdfs:subClassOf
INFO missing_superclass CL:1000272 rdfs:subClassOf
INFO missing_superclass CL:1000296 rdfs:subClassOf
INFO missing_superclass CL:1000298 rdfs:subClassOf
Expand Down Expand Up @@ -620,8 +617,6 @@ INFO missing_superclass CL:4023008 rdfs:subClassOf
INFO missing_superclass CL:4023009 rdfs:subClassOf
INFO missing_superclass CL:4023012 rdfs:subClassOf
INFO missing_superclass CL:4023013 rdfs:subClassOf
INFO missing_superclass CL:4023017 rdfs:subClassOf
INFO missing_superclass CL:4023018 rdfs:subClassOf
INFO missing_superclass CL:4023019 rdfs:subClassOf
INFO missing_superclass CL:4023035 rdfs:subClassOf
INFO missing_superclass CL:4023038 rdfs:subClassOf
Expand All @@ -636,7 +631,6 @@ INFO missing_superclass CL:4023062 rdfs:subClassOf
INFO missing_superclass CL:4023063 rdfs:subClassOf
INFO missing_superclass CL:4023066 rdfs:subClassOf
INFO missing_superclass CL:4023068 rdfs:subClassOf
INFO missing_superclass CL:4023069 rdfs:subClassOf
INFO missing_superclass CL:4023072 rdfs:subClassOf
INFO missing_superclass CL:4023074 rdfs:subClassOf
INFO missing_superclass CL:4023076 rdfs:subClassOf
Expand Down Expand Up @@ -749,3 +743,8 @@ INFO missing_superclass CL:4047002 rdfs:subClassOf
INFO missing_superclass CL:4047003 rdfs:subClassOf
INFO missing_superclass CL:4047004 rdfs:subClassOf
INFO missing_superclass CL:4047005 rdfs:subClassOf
INFO missing_superclass CL:4047018 rdfs:subClassOf
INFO missing_superclass CL:4047019 rdfs:subClassOf
INFO missing_superclass CL:4047051 rdfs:subClassOf
INFO missing_superclass CL:4047052 rdfs:subClassOf
INFO missing_superclass CL:4052002 rdfs:subClassOf
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